View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16351_low_7 (Length: 237)
Name: NF16351_low_7
Description: NF16351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16351_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 18738142 - 18738315
Alignment:
| Q |
13 |
aaaataaggacgaaatggagagcaaaaccaattacgctagataattgatacttacgctttgaatagcaacaacattggaaacattattccaattccaatt |
112 |
Q |
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| T |
18738142 |
aaaataaggacgaaatggagagcaaaaccaattacgctagataattgatacttacgctttgaatagcaacaacattggaaa-attattccaattccaatt |
18738240 |
T |
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| Q |
113 |
gcagctactaattacaaaacacaaaattctcggtgataataggaagaagaaaaacacataaacgtgaccaaataaa |
188 |
Q |
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| T |
18738241 |
gcagctagtaattacagaacacaaaattctcggtgataataggaagaag-aaaacacatcaacgtgaccaaataaa |
18738315 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 18739414 - 18739455
Alignment:
| Q |
181 |
caaataaataaaggaaatactaacaagtgtcattaagaaact |
222 |
Q |
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| T |
18739414 |
caaataaataaaggaaatactaacaagtgtcattaagaaact |
18739455 |
T |
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