View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16352_high_2 (Length: 410)

Name: NF16352_high_2
Description: NF16352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16352_high_2
NF16352_high_2
[»] chr4 (1 HSPs)
chr4 (12-390)||(38410811-38411175)
[»] chr8 (6 HSPs)
chr8 (298-392)||(45062856-45062950)
chr8 (326-392)||(45058895-45058960)
chr8 (326-392)||(45059664-45059729)
chr8 (326-392)||(45062056-45062120)
chr8 (326-392)||(45060442-45060506)
chr8 (326-392)||(45061249-45061313)
[»] chr1 (1 HSPs)
chr1 (72-131)||(1884709-1884768)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 38411175 - 38410811
Alignment:
Q  12 taaggtaaacgatgcaaaagaacggcgatcgtttgcatttctgatgaaaggtgaagagagatgacaagttttggtttggagggagaatagaaaataacat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  38411175 taaggtaaacgatgcaaaagaacggcgatcgtttgcatttctgatgaaaggtgaag------------ttttggtttggagggagaatagaaaataacat 38411088  T
Q  112 ttggttactaataaaatgacatttcatttctgcgactatgatatcatacatccttgttggctaacctgaatcagttttagnnnnnnnttggtttttatga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  38411087 ttggttactaataaaatgacatttcatttctgcgactatgatatcatacatccttgttggctaacctgaatcagttttagaaaaaagttggtttttatga 38410988  T
Q  212 aaacggtttttagaaaccaaactgaaccataaatttggtttggttttaaaccatgcacacccctaatgagaggcaccggtctatatttttcattttcatt 311  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  38410987 aaacggtatttagaaaccaaactg--ccataaatttggtttggttttaaaccatgcacacccctaacgagaggcaccagtctatatttttcattttcatt 38410890  T
Q  312 tccacacacaacacaactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattga 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38410889 tccacacacaacacaactggcaatgatgataaaaaggccggtcttacggctaccatttacttctttggtagtagattga 38410811  T

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Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 45062950 - 45062856
Alignment:
Q  298 ttttcattttcatttccacacacaacacaactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt 392  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||    
T  45062950 ttttcattttcatttccacacacaacacagctggcaatgatgataaacatgccggtcttacggctaccatttacttctttggtagtagattgatt 45062856  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 45058960 - 45058895
Alignment:
Q  326 aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt 392  Q
    |||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||    
T  45058960 aactggcaatgatgataaaa-ggccggtcttacggcttccatttacttctatggtagtagattgatt 45058895  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 45059729 - 45059664
Alignment:
Q  326 aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt 392  Q
    ||||||||||||||||| || |  ||||||||| || ||||||||||||||||||||||||||||||    
T  45059729 aactggcaatgatgatataa-gttcggtcttaccgctaccatttacttctttggtagtagattgatt 45059664  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 45062120 - 45062056
Alignment:
Q  326 aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt 392  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||||  |||||||||||||||||    
T  45062120 aactggcaatgatgataaaa-ggccggtcttacggctgccatttactt-attggtagtagattgatt 45062056  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 45060506 - 45060442
Alignment:
Q  326 aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt 392  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| |  |||||||||||||||||    
T  45060506 aactggcaatgatgataaaa-ggccggtcttacggctgccatttacgt-attggtagtagattgatt 45060442  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 45061313 - 45061249
Alignment:
Q  326 aactggcaatgatgataaaaaggccggtcttacggccaccatttacttctttggtagtagattgatt 392  Q
    |||||||||||||||| |||||||||||||||| ||  ||||||||||  |||||||||||||||||    
T  45061313 aactggcaatgatgat-aaaaggccggtcttacagctgccatttactt-attggtagtagattgatt 45061249  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 1884768 - 1884709
Alignment:
Q  72 atgacaagttttggtttggagggagaatagaaaataacatttggttactaataaaatgac 131  Q
    |||| ||||||| ||||||| ||||||| | ||| |||| ||||||||||||||||||||    
T  1884768 atgaaaagtttttgtttggatggagaatgggaaacaacacttggttactaataaaatgac 1884709  T

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