View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16352_high_4 (Length: 325)
Name: NF16352_high_4
Description: NF16352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16352_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 8233089 - 8233386
Alignment:
| Q |
14 |
tactaactgcttgttggaaattgtcaaattcctcataacnnnnnnnnngacaatgtacatttggaatccataacaaagatgtaaaagctcagattattat |
113 |
Q |
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| T |
8233089 |
tacttactgcttgatggaaattgtcaaattcttcataactttttttt-gacaatgcacatttggaatccataccaaagatgtaaaagctcagattatgat |
8233187 |
T |
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| Q |
114 |
a----agtttatttcatgaatacattcggaatccataataaaacagttttaaggagtttcaaacttcaaaggtatcaatataacaatacaaacaaaattg |
209 |
Q |
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| T |
8233188 |
attttagtttatttcatgaatacattcggaatccataataaaacagttttaaggagtttcaaacttcaaaggtatcaatataacaatacaaacaaaattg |
8233287 |
T |
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| Q |
210 |
gaatagcacttaagctgccacgttattgtactctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccat |
308 |
Q |
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| T |
8233288 |
gaatagcacttaagctgccacgttattgtactctctttcaacagcttttttgaggatgctgtctttttccaagaccatttgaattggcatgaaacccat |
8233386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 8236670 - 8236733
Alignment:
| Q |
245 |
tttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccat |
308 |
Q |
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| T |
8236670 |
tttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccat |
8236733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 8223556 - 8223625
Alignment:
| Q |
239 |
actctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccat |
308 |
Q |
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| T |
8223556 |
actctctttcaacagctatttttaggatgctgtcttcttccaagaccatttgaattggcatgaaacccat |
8223625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 8211079 - 8211147
Alignment:
| Q |
239 |
actctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaaccca |
307 |
Q |
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| T |
8211079 |
actctctttcaacagctatttttaggatgctgtcttcttccaagaccatttgaattggcatgaaaccca |
8211147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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