View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16352_high_6 (Length: 225)
Name: NF16352_high_6
Description: NF16352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16352_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 45969851 - 45970039
Alignment:
| Q |
19 |
aacaacagactaagtgcattgtccttccatattagagagtattattggttggatatgagaaaagtgaatgaaatatataggtataaaacagaagagtact |
118 |
Q |
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| T |
45969851 |
aacaacagactaagtgcattgtccttccatattagagagtattattggttggatatgagaaaagtgaatgaaatatacaggtataaaacagaagagtact |
45969950 |
T |
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| Q |
119 |
ctttagatgcaactaacaagttcaacatctatccggaacaaattccaatgtggttaatggattggattccagatgaaggtggttatttg |
207 |
Q |
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| T |
45969951 |
ctttagatgcaactaacaagttcaacatctatccggaacaaattccaatgtggttaatggattggattccagaagaaggtggttatttg |
45970039 |
T |
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 37653031 - 37652862
Alignment:
| Q |
19 |
aacaacagactaagtgcattgtccttccatattagagagtattattggttggatatgagaaaagtgaatgaaatatataggtataaaacagaagagtact |
118 |
Q |
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| T |
37653031 |
aacaacagactgagtgcactatcgttccacattagacaatattattgggtggatatgaaaaagattaatgaaatatatagatacaacacagaagagtact |
37652932 |
T |
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| Q |
119 |
ctttagatgcaactaacaagttcaacatctatccggaacaaattccaatgtggttaatggattggattcc |
188 |
Q |
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| T |
37652931 |
ccatggatgccatcaacaaattcaacatctatcctgaacaaattcctttctgggtaatggattggattcc |
37652862 |
T |
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