View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16352_low_1 (Length: 559)
Name: NF16352_low_1
Description: NF16352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16352_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 206 - 476
Target Start/End: Original strand, 15057428 - 15057706
Alignment:
| Q |
206 |
atataaaccaatcttgctatcattt-attcattttcacaagccgaacatcctcttctctctctaaccttcgaaaatctcaaaacgcaataatatagctta |
304 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15057428 |
atataaaccaatcttgctatcattttattcattttcacaagctaaacattcttttctctctctaaccttcgaaaatctcaaaacgcaataatatagctta |
15057527 |
T |
|
| Q |
305 |
cgtagttaacatatatgagtttgattgagataaaattcaaacatgaatatagtctctcactacataaaagtgacatca-------ttttcatatgtttaa |
397 |
Q |
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| T |
15057528 |
cgtagttaacatatatgagtttgattgagataaaattcaaacatgaatatagtctctcactacataaaagtgacatcattttcatttttcatatgtttaa |
15057627 |
T |
|
| Q |
398 |
aaatatacatgttttatggtgtcatatgcgtgtgataagatcagagccacaacttttagtaccataaaaatagtgattt |
476 |
Q |
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| T |
15057628 |
aaatatacattttttatggtgtcatatgcgtgtgataagatcagagccacaacttttagtaccataaaaatagtgattt |
15057706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 15068974 - 15069021
Alignment:
| Q |
337 |
aaattcaaacatgaatatagtctctcactacataaaagtgacatcatt |
384 |
Q |
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| T |
15068974 |
aaatgcaaacataagtatagtctctcactacatataagtgacatcatt |
15069021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 23073452 - 23073504
Alignment:
| Q |
135 |
taggattagggtttg-caattagggta-gcatgtttgctagaattagatataa |
185 |
Q |
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| T |
23073452 |
taggattagggtttgacaattagggtaagcatgtttgcaaggattagatataa |
23073504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 30860119 - 30859996
Alignment:
| Q |
315 |
atatatgagtttgattgagataaaattcaaacatgaatatagtctctcactacataaaagtgacatcattttcatatgtttaaaaatatacatgttttat |
414 |
Q |
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||||||||||||||||||||| |||| ||||||||| |||||| |||||||| ||| |||||| |||||| || ||||||||||||||||| |||| | |
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| T |
30860119 |
atatatgagtttgattgagattaaatgcaaacatgagtatagtttctcactaaatataagtgagatcattctctcgtgtttaaaaatatacattttttgt |
30860020 |
T |
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| Q |
415 |
ggtgtcatatgcgtgtgataagat |
438 |
Q |
| |
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|| || |||||| ||||||||||| |
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| T |
30860019 |
ggcgtaatatgcatgtgataagat |
30859996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 26955466 - 26955417
Alignment:
| Q |
138 |
gattagggtttg-caattagggtag-catgtttgctagaattagatataa |
185 |
Q |
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|
| T |
26955466 |
gattagggtttggcaattagggtaaacatgtttgctagaattagatataa |
26955417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 38681194 - 38681142
Alignment:
| Q |
135 |
taggattagggttt-gcaattagggta-gcatgtttgctagaattagatataa |
185 |
Q |
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|||||||||||||| |||| ||||||| ||||||||||||| ||||||||||| |
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| T |
38681194 |
taggattagggtttagcaaatagggtaagcatgtttgctaggattagatataa |
38681142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 16352146 - 16352205
Alignment:
| Q |
136 |
aggattagggtttg-caattagggta-gcatgtttgctagaattagatataataaaggat |
193 |
Q |
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| T |
16352146 |
aggattagggtttggcaattagggtaagcatgtttgctaggattagatataataaaggat |
16352205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 40162260 - 40162216
Alignment:
| Q |
150 |
caattagggta-gcatgtttgctagaattagatataataaaggat |
193 |
Q |
| |
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||||||||||| ||||||||| ||| ||||||||||||||||||| |
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| T |
40162260 |
caattagggtaagcatgtttgttaggattagatataataaaggat |
40162216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 53689301 - 53689236
Alignment:
| Q |
132 |
aagtaggattagggtttg-caattagggta-gcatgtttgctagaattagatataataaaggatta |
195 |
Q |
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| T |
53689301 |
aagtaggtttagggtttggcaattagggtaagcatgtttgctaggattaaatataataaaggatta |
53689236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 26449146 - 26449098
Alignment:
| Q |
139 |
attagggtttg-caattagggta-gcatgtttgctagaattagatataa |
185 |
Q |
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||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
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| T |
26449146 |
attagggtttggcaattagggtaagcatgtttgctaggattagatataa |
26449098 |
T |
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