View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16352_low_6 (Length: 239)

Name: NF16352_low_6
Description: NF16352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16352_low_6
NF16352_low_6
[»] chr7 (3 HSPs)
chr7 (5-222)||(9688183-9688403)
chr7 (65-163)||(14972100-14972198)
chr7 (65-163)||(15401576-15401674)
[»] chr4 (2 HSPs)
chr4 (5-222)||(13554560-13554780)
chr4 (71-180)||(28801727-28801836)
[»] chr2 (1 HSPs)
chr2 (70-205)||(19391883-19392017)
[»] chr3 (2 HSPs)
chr3 (65-218)||(21389347-21389500)
chr3 (65-130)||(9025431-9025496)
[»] chr8 (1 HSPs)
chr8 (70-211)||(14757467-14757608)
[»] chr6 (4 HSPs)
chr6 (65-154)||(23986557-23986646)
chr6 (65-154)||(24000158-24000247)
chr6 (70-154)||(23998794-23998878)
chr6 (65-154)||(23999476-23999565)
[»] chr1 (1 HSPs)
chr1 (3-61)||(42914175-42914233)
[»] chr5 (1 HSPs)
chr5 (1-42)||(24233574-24233615)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 9688403 - 9688183
Alignment:
Q  5 caagatgaatttttctcggtgattattaatttcatttttgtttcttcaaaaataaaac---tgtctttcttatttaaagcaagaggtatctaggatacct 101  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||    
T  9688403 caagatgaattgttcttggtgattattaatttcattttggtttcttcaaaaaaaaaaaaattgtctttcttatttaaagcaagaggtatctaggatacct 9688304  T
Q  102 aactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcatacttggtgtcaatgtattcaaagattacatcct 201  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9688303 aactccctacatattttgagaaaataatcggatggtagtggttttgtaaaaatgtgggcaagttcacacttggtgtcaatgtattcaaagattacatcct 9688204  T
Q  202 tcttttctacaagatccttaa 222  Q
    ||||||||||||||| |||||    
T  9688203 tcttttctacaagattcttaa 9688183  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 14972100 - 14972198
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaag 163  Q
    |||| ||||||||| | |||||||||| | ||||||||  |||||||  || ||||||||||| | ||||| |||||||||||| ||||| | ||||||    
T  14972100 tcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttgtgaaaatatcggcaag 14972198  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 15401576 - 15401674
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaag 163  Q
    |||| ||||||||| | |||||||||| | ||||||||  |||||||  || ||||||||||| | ||||| |||||||||||| ||||| | ||||||    
T  15401576 tcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttgtgaaaatatcggcaag 15401674  T

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Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 13554780 - 13554560
Alignment:
Q  5 caagatgaatttttctcggtgattattaatttcatttttgtttcttcaaaaataaaac---tgtctttcttatttaaagcaagaggtatctaggatacct 101  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||    
T  13554780 caagatgaattgttcttggtgattattaatttcattttggtttcttcaaaaaaaaaaaaattgtctttcttatttaaagcaagaggtatctaggatacct 13554681  T
Q  102 aactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcatacttggtgtcaatgtattcaaagattacatcct 201  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13554680 aactccctacatattttgagaaaataatcggatggtagtggttttgtaaaaatgtgggcaagttcacacttggtgtcaatgtattcaaagattacatcct 13554581  T
Q  202 tcttttctacaagatccttaa 222  Q
    ||||||||||||||| |||||    
T  13554580 tcttttctacaagattcttaa 13554560  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 28801727 - 28801836
Alignment:
Q  71 ttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcatac 170  Q
    |||||||||| |||||||||||| ||||||||  |||||||  || ||  |||| || ||||||| ||| ||||||||  ||||||  ||||||| | ||    
T  28801727 ttatttaaagtaagaggtatctatgatacctagttccctacggatcttacgaaaggagtcggatggtagaggttttgtagaaatgtcagcaagttgacac 28801826  T
Q  171 ttggtgtcaa 180  Q
    || |||||||    
T  28801827 ttagtgtcaa 28801836  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 19391883 - 19392017
Alignment:
Q  70 cttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcata 169  Q
    |||||||||||||||||||||||| ||||||||  |||||||| || ||||| ||||||||||||| ||| |||||| | |||||||  ||||| | | |    
T  19391883 cttatttaaagcaagaggtatctaagatacctag-tccctacagatcttgaggaaagaatcggatggtagcggttttataaaaatgtcagcaagatgaca 19391981  T
Q  170 cttggtgtcaatgtattcaaagattacatccttctt 205  Q
    ||| |||||||  || ||||| ||||||||||||||    
T  19391982 cttagtgtcaacatactcaaaaattacatccttctt 19392017  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 21389500 - 21389347
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagt 164  Q
    |||| |||||||||||||||||||||| | ||||||||| | |||||  |||||||||||||| ||||||| |||||||||||| |||| ||  |||||     
T  21389500 tcttgcttatttaaagcaagaggtatccaagatacctaatttcctacggattttgagaaaagactcggatggtagtggttttgtaaaaaagtcagcaagc 21389401  T
Q  165 tcatacttggtgtcaatgtattcaaagattacatccttcttttctacaagatcc 218  Q
    | |   || ||||||| ||| || ||  |||||||||||||||| ||| |||||    
T  21389400 tgacttttagtgtcaacgtactcgaacgttacatccttcttttcaacatgatcc 21389347  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 9025431 - 9025496
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatc 130  Q
    |||| |||||||||||| |||||||| || |||||||| ||||||||||||||||| |||||||||    
T  9025431 tcttgcttatttaaagctagaggtatataagatacctagctccctacatattttgataaaagaatc 9025496  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 14757467 - 14757608
Alignment:
Q  70 cttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaatgtgggcaagttcata 169  Q
    ||||||||||||||| |||||| | ||||||||  || ||||  ||||| |||||||| |||||||  ||||||||  | ||||| |  ||||||| | |    
T  14757467 cttatttaaagcaagtggtatccatgatacctagttcgctacggattttaagaaaagagtcggatggaagtggtttgctaaaaatatttgcaagttgaca 14757566  T
Q  170 cttggtgtcaatgtattcaaagattacatccttcttttctac 211  Q
     ||||||||||| || ||||| |||||||| |||||||||||    
T  14757567 tttggtgtcaatatactcaaaaattacatcattcttttctac 14757608  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 23986646 - 23986557
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 154  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| ||| |||||||| |||||    
T  23986646 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaat 23986557  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 24000247 - 24000158
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 154  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| ||| |||||||| |||||    
T  24000247 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaat 24000158  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 23998878 - 23998794
Alignment:
Q  70 cttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 154  Q
    ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| ||| |||||||| |||||    
T  23998878 cttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaat 23998794  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 23999565 - 23999476
Alignment:
Q  65 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaagaatcggatgctagtggttttgttaaaat 154  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||| || ||||||||||| ||||||| |||  ||||||| |||||    
T  23999565 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggagttttgtaaaaat 23999476  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 42914175 - 42914233
Alignment:
Q  3 tgcaagatgaatttttctcggtgattattaatttcatttttgtttcttcaaaaataaaa 61  Q
    ||||||||||||  |||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  42914175 tgcaagatgaatcgttcttggtgattattaatttcattttggtttctttaaaaaaaaaa 42914233  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24233615 - 24233574
Alignment:
Q  1 tgtgcaagatgaatttttctcggtgattattaatttcatttt 42  Q
    ||||||||||||||| |||| ||||||||||||||| |||||    
T  24233615 tgtgcaagatgaattgttcttggtgattattaattttatttt 24233574  T

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