View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16352_low_8 (Length: 205)

Name: NF16352_low_8
Description: NF16352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16352_low_8
NF16352_low_8
[»] chr5 (9 HSPs)
chr5 (13-187)||(35423776-35423950)
chr5 (13-187)||(35376517-35376691)
chr5 (13-134)||(35754972-35755093)
chr5 (13-134)||(35386170-35386291)
chr5 (13-134)||(35410831-35410952)
chr5 (12-106)||(35437199-35437293)
chr5 (13-110)||(35367042-35367139)
chr5 (137-181)||(35370364-35370408)
chr5 (19-122)||(35388441-35388544)
[»] chr1 (3 HSPs)
chr1 (12-179)||(10409900-10410067)
chr1 (13-121)||(10415598-10415706)
chr1 (13-120)||(10420485-10420592)
[»] chr7 (1 HSPs)
chr7 (13-134)||(29623039-29623160)
[»] chr2 (3 HSPs)
chr2 (13-124)||(30626239-30626350)
chr2 (13-124)||(30663190-30663301)
chr2 (13-124)||(30671870-30671981)
[»] chr3 (1 HSPs)
chr3 (13-134)||(1153904-1154025)
[»] chr8 (1 HSPs)
chr8 (15-94)||(13564816-13564895)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 35423950 - 35423776
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423950 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 35423851  T
Q  113 acctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35423850 acctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcc 35423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 35376691 - 35376517
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35376691 agaagaacattgcttggcttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 35376592  T
Q  113 acctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35376591 acctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttccagattcc 35376517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 35755093 - 35754972
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    ||||||||||||||||| |||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  35755093 agaagaacattgcttggcttaatatcacagtgaactacgacttgttctgtatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtcta 35754994  T
Q  113 acctttgtgtgaaattgagatt 134  Q
    ||||||||||||  ||||||||    
T  35754993 acctttgtgtgaggttgagatt 35754972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 35386291 - 35386170
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||| |||||||| |||| |||||| ||||||||  |||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||    
T  35386291 agaagaacgttgcttggcttaagatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtcta 35386192  T
Q  113 acctttgtgtgaaattgagatt 134  Q
    |||||| |||||  ||||||||    
T  35386191 acctttatgtgaggttgagatt 35386170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 35410952 - 35410831
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||| ||||| || |||| |||||| ||||||||| |||||||||| ||||||||||||||||| | |||||||||||| || |||||||||||||    
T  35410952 agaagaacgttgctcggcttaagatcacagtgaactacagcttgctctgtctcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtcta 35410853  T
Q  113 acctttgtgtgaaattgagatt 134  Q
    ||||||||||||  ||||||||    
T  35410852 acctttgtgtgaggttgagatt 35410831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 35437293 - 35437199
Alignment:
Q  12 gagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaa 106  Q
    |||||||||||| ||||| |||| |||||| ||||||||| |||  |  | || || ||||||||||||||||||||| ||||| ||||||||||    
T  35437293 gagaagaacattacttggcttaatatcacagtgaactacagcttcatgggaattatggtgaagataatccaatgcatgggctacatcgagagcaa 35437199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 35367139 - 35367042
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtc 110  Q
    |||||||| ||||| || |||| |||||| |||||||    || ||||||| |||||||||||||||| | |||||||||||| || |||||||||||    
T  35367139 agaagaacgttgctcggcttaatatcacagtgaactatggatttctctgtaccattgtgaagataatcgagtgcatgagctacatcaagagcaatgtc 35367042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 35370408 - 35370364
Alignment:
Q  137 gatttctagactcatgatcttcgttaccatgcaacaggttttcta 181  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  35370408 gatttctagactcatgttcttcgttaccatgcaacatgttttcta 35370364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 35388544 - 35388441
Alignment:
Q  19 acattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaaccttt 118  Q
    |||||| |||| |||| |||||||||||||||| |||||||   || |||||||||||||||||| |   ||||||| | |||||||||   ||||||||    
T  35388544 acattgtttggcttaatatcacaatgaactacagcttgctcaaaattattgtgaagataatccaacgtgcgagctacattgagagcaatacttaaccttt 35388445  T
Q  119 gtgt 122  Q
    ||||    
T  35388444 gtgt 35388441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 10409900 - 10410067
Alignment:
Q  12 gagaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtct 111  Q
    ||||||||||||||||||||||||  ||| |||||| || |||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||    
T  10409900 gagaagaacattgcttggtttaacgccactatgaaccaccacttgctctgcatcaatgtgaagataatccaatgcatgagctacgttgagaacaatgtct 10409999  T
Q  112 aacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaacaggttttc 179  Q
    |||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||| ||||||||    
T  10410000 aacctttgtgtgaaattgagattcagatttctagactcgtgttctttattaccatgcaaaaggttttc 10410067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 10415598 - 10415706
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||| |||||||  ||||||||||| ||||||||  |||||||||||||||||||||||||||| | |||||||||||  || ||||| |||||||    
T  10415598 agaagaacgttgcttgacttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctagatcaagagcgatgtcta 10415697  T
Q  113 acctttgtg 121  Q
    |||||||||    
T  10415698 acctttgtg 10415706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 10420485 - 10420592
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||| ||||| || |||| |||||| |||||||   ||||||||||| |||||||||||||||  | |||||||||||| || ||||||||||| |    
T  10420485 agaagaacgttgctcggcttaatatcacagtgaactatggcttgctctgtaccattgtgaagataattaagtgcatgagctacatcaagagcaatgtcaa 10420584  T
Q  113 acctttgt 120  Q
     |||||||    
T  10420585 ccctttgt 10420592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 29623039 - 29623160
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||| || |||||||||||||    
T  29623039 agaagaacattgcttggcttaacatcacagtgaactacagcttgttctatatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtcta 29623138  T
Q  113 acctttgtgtgaaattgagatt 134  Q
     |||||||||||  ||||||||    
T  29623139 tcctttgtgtgaggttgagatt 29623160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 30626350 - 30626239
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||||||| ||||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||| |    
T  30626350 agaagaacattgtttggtttcacatcacattgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtcaa 30626251  T
Q  113 acctttgtgtga 124  Q
     |||||||||||    
T  30626250 ccctttgtgtga 30626239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 30663301 - 30663190
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||||||| ||||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||| |    
T  30663301 agaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtcaa 30663202  T
Q  113 acctttgtgtga 124  Q
     |||||||||||    
T  30663201 ccctttgtgtga 30663190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 30671981 - 30671870
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    |||||||||||| ||||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||| |    
T  30671981 agaagaacattgtttggtttcacatcacagtgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtcaa 30671882  T
Q  113 acctttgtgtga 124  Q
     |||||||||||    
T  30671881 ccctttgtgtga 30671870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 1154025 - 1153904
Alignment:
Q  13 agaagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtcta 112  Q
    ||||||||||||||||| |||| |||||| ||||||  |||||||| |||||||||||||||| |||| | |||||||||||  || |||||||  ||||    
T  1154025 agaagaacattgcttggcttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagcaaaatcta 1153926  T
Q  113 acctttgtgtgaaattgagatt 134  Q
     ||||| |||||  ||||||||    
T  1153925 ccctttttgtgagcttgagatt 1153904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 13564895 - 13564816
Alignment:
Q  15 aagaacattgcttggtttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagcta 94  Q
    |||||| ||||| || ||||||||||||||| |||   ||||||||  |||||||||||||||||||||||||| |||||    
T  13564895 aagaacgttgctcggcttaacatcacaatgacctaaggcttgctctacatcattgtgaagataatccaatgcataagcta 13564816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University