View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16353_low_1 (Length: 463)
Name: NF16353_low_1
Description: NF16353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16353_low_1 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 11849980 - 11849535
Alignment:
| Q |
11 |
catcatcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11849980 |
catcttcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct |
11849881 |
T |
|
| Q |
111 |
cccttcaacgacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849880 |
cccttcaacgacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
11849781 |
T |
|
| Q |
211 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
11849780 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctgcattcatctttttggttgttccagt |
11849681 |
T |
|
| Q |
311 |
tccaacatacatcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849680 |
tccaacatacatcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcc |
11849581 |
T |
|
| Q |
411 |
cagcaaaacacatttcttgctcttatcatctaacttgcttcttttc |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11849580 |
cagcaaaacacatttcttgctcttatcatctaacttgcttcttttc |
11849535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 5876640 - 5876209
Alignment:
| Q |
11 |
catcatcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
5876640 |
catcttcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatatgccatccatgaaggtttttttcttaccct |
5876541 |
T |
|
| Q |
111 |
cccttcaacgacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876540 |
cccttcaacgacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg |
5876441 |
T |
|
| Q |
211 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagt |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
5876440 |
cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttcca--------------gcctgcattcatctttttggttgtcccagt |
5876355 |
T |
|
| Q |
311 |
tccaacatacatcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876354 |
tccaacatacatcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcc |
5876255 |
T |
|
| Q |
411 |
cagcaaaacacatttcttgctcttatcatctaacttgcttcttttc |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5876254 |
cagcaaaacacatttcttgctcttatcatctaacttgcttcttttc |
5876209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 236 - 456
Target Start/End: Complemental strand, 26554328 - 26554108
Alignment:
| Q |
236 |
cttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagttccaacatacatcttcttcaaaaat |
335 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||||||| ||| | |||||||| ||||| ||||||| ||||| ||| |||||||||||||||| |
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| T |
26554328 |
cttcaatgtcattctcggaatcatttttgaactctaaaacatccagactacattcctctttgcttctgtcccaattccagcattcatcttcttcaaaaat |
26554229 |
T |
|
| Q |
336 |
cacatccttattaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcccagcaaaacacatttcttgctctta |
435 |
Q |
| |
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|||||| || ||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
26554228 |
cacatctttgctaatgattattttcttggaaattggatcatataacctgtaggcctttgattcatcacttactcccaacaaaacacatttcttgctcttg |
26554129 |
T |
|
| Q |
436 |
tcatctaacttgcttcttttc |
456 |
Q |
| |
|
||||||| ||| ||||||||| |
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|
| T |
26554128 |
tcatctagcttacttcttttc |
26554108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 26554527 - 26554438
Alignment:
| Q |
28 |
atcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttca |
117 |
Q |
| |
|
||||||||||||| | ||||||||| || || |||||||| |||||||| ||| ||||||| | |||| | ||||||||||||||||| |
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| T |
26554527 |
atcattgcattcataccatcttcatctgacaaaccttcacctgtttcatagtcttccatccaacacggtggtcttcttaccctcccttca |
26554438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 1606 - 1681
Alignment:
| Q |
16 |
tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
91 |
Q |
| |
|
|||| ||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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|
| T |
1606 |
tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
1681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 7050 - 7125
Alignment:
| Q |
16 |
tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
91 |
Q |
| |
|
|||| ||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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|
| T |
7050 |
tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
7125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 14246376 - 14246301
Alignment:
| Q |
16 |
tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg |
91 |
Q |
| |
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|||| ||||||||||||||| |||| ||| || |||||||| | ||||| || ||||||||||||| |||||||| |
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| T |
14246376 |
tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg |
14246301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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