View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16353_low_2 (Length: 389)
Name: NF16353_low_2
Description: NF16353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16353_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 44 - 369
Target Start/End: Complemental strand, 30726510 - 30726188
Alignment:
| Q |
44 |
ctgcttttattgttttccgaattagctcctcaactcaattttttattatccatttatcaattttgtaaattggttattgcatttaacattgaaaaaactc |
143 |
Q |
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| T |
30726510 |
ctgcttttattgttttccgaattagctcctcaactcaattttttattttgtatttatcaattttgtaaattggttattgcatttaacattgaaaaaactc |
30726411 |
T |
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| Q |
144 |
ctctnnnnnnncattgagaaaattttgtaggtcgaacttatcaattttctaaattgtctttaaaacttatctaccatagtttcaaacttttcttttataa |
243 |
Q |
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| T |
30726410 |
cactaaaaaaacattgagaaaattttgtaggtcgaacttatcaattttctaaattgtctttaaaacttatctaccatagtttcaaacttttcttttataa |
30726311 |
T |
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| Q |
244 |
gcaagatatattgaacaaaagagaataacccgccatgaatcaaactaacaacctttggnnnnnnnnngtatccaaattatcagcttcaaaggttgaatag |
343 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
30726310 |
gcaagatatattgaacaaaagagaataacc--ccatgaatcaaactaacaacctttgg-aaaaaaaagtatccaaattatgagcttcaaaggttgaatag |
30726214 |
T |
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| Q |
344 |
caaaaatgggaacattaataaaaata |
369 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30726213 |
caaaaatgggaacattaataaaaata |
30726188 |
T |
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