View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16353_low_3 (Length: 365)
Name: NF16353_low_3
Description: NF16353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16353_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 35847151 - 35846942
Alignment:
| Q |
11 |
atcatcatgcacaaagtagaaagcacatcttcctttagagggatgtacttctgaggaaaatattcaataaaggaaaattttctttggaaaatcaagttag |
110 |
Q |
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| T |
35847151 |
atcatcatgcacaaagtagaaagcacatcttcctttagagggatgtacttctgaggaaaatattcaataaaggaaaattttctttggaaaatcaagttag |
35847052 |
T |
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| Q |
111 |
gagattgattaggaaatcatcaacaagttgtagaaaaaattaaattataaatataaagttacataagataacaaatattagatggattattttaattata |
210 |
Q |
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| T |
35847051 |
gagattgattaggaaatcatcaacaagttgtagaaaaaattaaattataaatataaagttacataagataacaaatattagatggattattttaattata |
35846952 |
T |
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| Q |
211 |
atcaaaatga |
220 |
Q |
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| T |
35846951 |
atcaaaatga |
35846942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 35846919 - 35846785
Alignment:
| Q |
217 |
atgattatgatcaaaatgaacataaaagggatattggtggaaaggaaagaataccatgaagatagagatattga-gggatatatatataaactatgatta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35846919 |
atgattatgatcaaaatgaacataaaagggatattggtggaaaggaaagaataccatgaagatagagatattgaggggatatatatataaactatgatta |
35846820 |
T |
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| Q |
316 |
agacttgctgaagaaaacaaaagcaaagaagtttct |
351 |
Q |
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| T |
35846819 |
agacttgctgaag-aaacaaaagcaaagaagtttct |
35846785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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