View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16354_high_4 (Length: 259)
Name: NF16354_high_4
Description: NF16354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16354_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 54010160 - 54010337
Alignment:
| Q |
46 |
cattccaatgattaagtagtgtagtaaacagttgagagagagggagggagtaagtgagtgggactaatgatgttgaatgtgaaagtggagccaggttggg |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54010160 |
cattccaatgattaagtagtgtagtaaacagttgagagagagggagggagtaagtgagtgggactaatgatgttgaatgtgaaagtggagccaggttggg |
54010259 |
T |
|
| Q |
146 |
ttgggttgagtcatagaagcatgagattctagacgcgtgtggggacttaatttaaacccaacaaacaaaacccattcg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54010260 |
ttgggttgagtcatagaagcatgagattctagacgcgtgtggggacttaatttaaacccaacaaacaaaacccattcg |
54010337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University