View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16354_low_3 (Length: 279)
Name: NF16354_low_3
Description: NF16354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16354_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 29018338 - 29018590
Alignment:
| Q |
12 |
tgaaggaacttaagaaaattagcaatagtataaaatggaaaagtagatgaaaattcatctcgacatttcaagcatagttctaaattgcagtctacaaccg |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29018338 |
tgaaggaacttaagcaaattagcaatagtataaaatggaaaagtagatgaaaattcatctcgacgtttcaagcatagttctaaattgcagtctacagccg |
29018437 |
T |
|
| Q |
112 |
caattgcagccacaagataaaggttttatctaaaggtctctgcggctacattttgccaagatatcaaggttcacagtataaccataaccacaatttagaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29018438 |
caattgcagccacaagataaaggttttatctaaaggtctctgcggctacattttgccgagatatcaaggttcacagtataaccataaccacaatttagaa |
29018537 |
T |
|
| Q |
212 |
ccatattttcaagtataagaatccattcatagtttacttggcacggataaact |
264 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29018538 |
ccatattttcacgtataagaatccattcatagtttacttggcacggataaact |
29018590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 53789045 - 53788990
Alignment:
| Q |
84 |
catagttctaaattgcagtctacaaccgcaattgcagccacaagataaaggtttta |
139 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||| || ||||||||| |
|
|
| T |
53789045 |
catagttctaaattgcagtctacaagtgcaattgcagtcgcaatatgaaggtttta |
53788990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 2801826 - 2801888
Alignment:
| Q |
76 |
atttcaagcatagttctaaattgcagtctacaaccgcaattgcagccacaagataaaggtttt |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| || |||||| || ||| ||||||||||| |
|
|
| T |
2801826 |
attttaagcatagttctaaattgcagtcaacaatcggaattgcggctgcaatataaaggtttt |
2801888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 26777113 - 26777166
Alignment:
| Q |
86 |
tagttctaaattgcagtctacaaccgcaattgcagccacaagataaaggtttta |
139 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
26777113 |
tagttctaaataacagtccacaactgcaattgcagccacaatataaaagtttta |
26777166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 32464769 - 32464725
Alignment:
| Q |
172 |
atatcaaggttcacagtataaccataaccacaatttagaaccata |
216 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
32464769 |
atatcaaggttcacattgtaaccataacagcaatttagaaccata |
32464725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University