View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16355_high_10 (Length: 279)

Name: NF16355_high_10
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16355_high_10
NF16355_high_10
[»] chr5 (17 HSPs)
chr5 (9-268)||(20772834-20773090)
chr5 (9-268)||(20781609-20781865)
chr5 (52-269)||(19236807-19237025)
chr5 (26-268)||(24929862-24930102)
chr5 (58-269)||(22461069-22461281)
chr5 (58-269)||(22467693-22467905)
chr5 (18-269)||(28909220-28909471)
chr5 (18-269)||(28945615-28945866)
chr5 (18-269)||(28895972-28896223)
chr5 (18-269)||(28924798-28925049)
chr5 (18-269)||(28889268-28889519)
chr5 (32-207)||(20820105-20820279)
chr5 (32-207)||(20827205-20827379)
chr5 (18-89)||(28931092-28931163)
chr5 (225-264)||(38144472-38144511)
chr5 (170-206)||(34830110-34830146)
chr5 (146-198)||(18407944-18407996)
[»] chr6 (15 HSPs)
chr6 (11-268)||(9099005-9099260)
chr6 (10-269)||(20007877-20008138)
chr6 (9-259)||(21364423-21364670)
chr6 (9-259)||(23968405-23968652)
chr6 (140-269)||(31252419-31252549)
chr6 (146-269)||(11288601-11288721)
chr6 (146-214)||(15458492-15458560)
chr6 (146-214)||(15465087-15465155)
chr6 (171-269)||(28288442-28288537)
chr6 (181-269)||(24563475-24563564)
chr6 (170-269)||(34639915-34640015)
chr6 (170-269)||(34646589-34646689)
chr6 (153-206)||(10986173-10986226)
chr6 (237-269)||(24641612-24641644)
chr6 (26-68)||(29097747-29097789)
[»] chr3 (14 HSPs)
chr3 (11-268)||(19235002-19235257)
chr3 (29-269)||(17131615-17131857)
chr3 (29-269)||(12033375-12033616)
chr3 (29-269)||(14865729-14865971)
chr3 (146-269)||(23370435-23370558)
chr3 (140-214)||(10389428-10389502)
chr3 (140-214)||(10414517-10414591)
chr3 (140-214)||(10421187-10421261)
chr3 (136-269)||(51301581-51301715)
chr3 (138-256)||(13312841-13312957)
chr3 (91-256)||(13323732-13323896)
chr3 (138-256)||(13302185-13302301)
chr3 (183-269)||(10555350-10555434)
chr3 (147-204)||(24933823-24933880)
[»] scaffold0053 (1 HSPs)
scaffold0053 (29-269)||(79419-79662)
[»] chr1 (4 HSPs)
chr1 (29-269)||(20851062-20851304)
chr1 (31-269)||(21710704-21710943)
chr1 (52-269)||(20857689-20857907)
chr1 (52-269)||(21706183-21706401)
[»] chr7 (15 HSPs)
chr7 (29-269)||(16090958-16091201)
chr7 (29-269)||(29181038-29181281)
chr7 (29-269)||(20906391-20906632)
chr7 (9-259)||(2465226-2465474)
chr7 (112-269)||(2971222-2971379)
chr7 (9-259)||(3857308-3857556)
chr7 (140-269)||(14319559-14319688)
chr7 (171-269)||(14230808-14230906)
chr7 (146-269)||(14567206-14567329)
chr7 (146-214)||(31155396-31155464)
chr7 (29-104)||(2966848-2966925)
chr7 (146-198)||(11382871-11382923)
chr7 (146-198)||(11389348-11389400)
chr7 (146-198)||(13679496-13679548)
chr7 (146-206)||(21230952-21231012)
[»] chr8 (4 HSPs)
chr8 (29-269)||(24320600-24320842)
chr8 (138-198)||(29643386-29643446)
chr8 (146-269)||(44477625-44477749)
chr8 (146-269)||(44492783-44492907)
[»] scaffold0023 (1 HSPs)
scaffold0023 (59-269)||(135352-135563)
[»] scaffold0131 (1 HSPs)
scaffold0131 (39-269)||(892-1121)
[»] scaffold0072 (1 HSPs)
scaffold0072 (29-269)||(49899-50143)
[»] scaffold0029 (2 HSPs)
scaffold0029 (9-259)||(91144-91394)
scaffold0029 (9-259)||(96870-97120)
[»] scaffold1318 (1 HSPs)
scaffold1318 (59-269)||(1842-2053)
[»] chr4 (3 HSPs)
chr4 (29-237)||(16146791-16147002)
chr4 (170-269)||(53483731-53483831)
chr4 (141-206)||(27906263-27906328)
[»] chr2 (9 HSPs)
chr2 (29-248)||(25180880-25181101)
chr2 (29-246)||(10460-10679)
chr2 (140-269)||(27207649-27207778)
chr2 (170-269)||(26885208-26885307)
chr2 (173-269)||(23168229-23168324)
chr2 (173-269)||(23579486-23579581)
chr2 (181-269)||(27366477-27366566)
chr2 (177-214)||(5706008-5706045)
chr2 (237-269)||(5705952-5705984)
[»] scaffold0384 (1 HSPs)
scaffold0384 (16-204)||(16059-16247)
[»] scaffold1469 (1 HSPs)
scaffold1469 (16-214)||(1227-1425)
[»] scaffold0127 (1 HSPs)
scaffold0127 (136-269)||(10231-10364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (170-269)||(492958-493057)
[»] scaffold0348 (1 HSPs)
scaffold0348 (29-204)||(9219-9396)
[»] scaffold0720 (1 HSPs)
scaffold0720 (140-269)||(3332-3461)
[»] scaffold0553 (1 HSPs)
scaffold0553 (146-269)||(10125-10248)
[»] scaffold0544 (1 HSPs)
scaffold0544 (146-269)||(1455-1578)
[»] scaffold0183 (1 HSPs)
scaffold0183 (146-268)||(6-125)
[»] scaffold0609 (1 HSPs)
scaffold0609 (140-269)||(5786-5916)
[»] scaffold0249 (1 HSPs)
scaffold0249 (146-214)||(13879-13947)
[»] scaffold0099 (1 HSPs)
scaffold0099 (26-197)||(12836-13019)
[»] scaffold0026 (1 HSPs)
scaffold0026 (146-269)||(111688-111812)
[»] scaffold0261 (1 HSPs)
scaffold0261 (140-206)||(23562-23628)
[»] scaffold0090 (1 HSPs)
scaffold0090 (146-199)||(18172-18225)
[»] scaffold0317 (1 HSPs)
scaffold0317 (146-198)||(1389-1441)
[»] scaffold0129 (2 HSPs)
scaffold0129 (237-269)||(45203-45235)
scaffold0129 (170-214)||(45259-45303)
[»] scaffold0107 (1 HSPs)
scaffold0107 (146-206)||(40524-40584)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 20772834 - 20773090
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20772834 acatcaacaatatagagtaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcaaaatcatcattaaccctaaat 20772933  T
Q  109 tttccaattttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaa 208  Q
    || ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20772934 ttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaa 20773033  T
Q  209 gacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    || ||  || | | ||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20773034 gataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 20781609 - 20781865
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20781609 acatcaacaatatagagtaggaaatcataataatcatcaaatacaacattataaacctgattcttacacattttcttcaaaatcatcattaaccctaaat 20781708  T
Q  109 tttccaattttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaa 208  Q
    || ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  20781709 ttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccacccttaccttagaattgcaaa 20781808  T
Q  209 gacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    || ||  || | | ||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20781809 gataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20781865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 19236807 - 19237025
Alignment:
Q  52 caacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaaaaacagttaaattgattacttttc 150  Q
    ||||| |||||||||||| |||| || ||||||| |||| ||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  19236807 caacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttc 19236906  T
Q  151 aaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctctt 250  Q
    | |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  19236907 agaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctctt 19237006  T
Q  251 ggtcttctctccttgcctt 269  Q
    |||||||||||||||||||    
T  19237007 ggtcttctctccttgcctt 19237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 268
Target Start/End: Complemental strand, 24930102 - 24929862
Alignment:
Q  26 taggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaattttacctta 125  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||    
T  24930102 taggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttccttcagaatcatcattaaccctaaatttcccaattttacctta 24930003  T
Q  126 aaaacagttaaattgatt-acttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataaca 224  Q
    | |||||||||||||||| | |||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||  ||  | ||    
T  24930002 agaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgtaaagataaagtgc--agca 24929905  T
Q  225 aatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    | ||| |||||||| |||||||||||||||||||| ||||||||    
T  24929904 agtcaattcctaagctcttctctcttggtcttctc-ccttgcct 24929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 269
Target Start/End: Original strand, 22461069 - 22461281
Alignment:
Q  58 tataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaattttaccttaaaaacagttaaattgattactttt-caaaaat 156  Q
    |||||||||||| |||| || |||||||  || ||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| |||| || ||||    
T  22461069 tataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaatttttcagaaat 22461168  T
Q  157 catatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtctt 256  Q
     ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  ||| | ||||||||||| ||||||||||||||||||||||    
T  22461169 tatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaggcacagcaaatcagttcttaagttcttctctcttggtctt 22461268  T
Q  257 ctctccttgcctt 269  Q
    |||||||||||||    
T  22461269 ctctccttgcctt 22461281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 269
Target Start/End: Original strand, 22467693 - 22467905
Alignment:
Q  58 tataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaattttaccttaaaaacagttaaattgattactttt-caaaaat 156  Q
    |||||||||||| |||| || |||||||  || ||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| |||| || ||||    
T  22467693 tataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaatttttcagaaat 22467792  T
Q  157 catatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtctt 256  Q
     ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  ||| | ||||||||||| ||||||||||||||||||||||    
T  22467793 tatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaggcacagcaaatcagttcttaagttcttctctcttggtctt 22467892  T
Q  257 ctctccttgcctt 269  Q
    |||||||||||||    
T  22467893 ctctccttgcctt 22467905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 28909471 - 28909220
Alignment:
Q  18 atacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaatt 117  Q
    ||||||| |||||||||||| ||||||| |||| |||| | |||||||||| | |||| ||||||||||||| ||||||| || ||||| ||| ||||||    
T  28909471 atacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatt 28909372  T
Q  118 tt-accttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaata 216  Q
    || ||||||| |||| |||||| | ||| |||||| |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| |||||| |    
T  28909371 tttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacgacaaa-a 28909273  T
Q  217 gcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||| | ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  28909272 gcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgcctt 28909220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 28945866 - 28945615
Alignment:
Q  18 atacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaatt 117  Q
    ||||||| |||||||||||| ||||||| |||| |||| | |||||||||| | |||| ||||||||||||| ||||||| || ||||| ||| ||||||    
T  28945866 atacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatt 28945767  T
Q  118 tt-accttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaata 216  Q
    || ||||||| |||| |||||| | ||| |||||| |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| |||||| |    
T  28945766 tttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacgacaaa-a 28945668  T
Q  217 gcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||| | ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  28945667 gcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgcctt 28945615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 28896223 - 28895972
Alignment:
Q  18 atacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaatt 117  Q
    ||||||| |||||||||||| ||||||| |||| |||| | |||||||||| | |||| ||||||||||||| ||||||| || ||||| ||| ||||||    
T  28896223 atacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatt 28896124  T
Q  118 tt-accttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaata 216  Q
    || ||||||| |||| |||||| | ||| |||||| |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| | |||| |    
T  28896123 tttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaaa-a 28896025  T
Q  217 gcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||| | ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  28896024 gcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgcctt 28895972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 28925049 - 28924798
Alignment:
Q  18 atacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaatt 117  Q
    ||||||| |||||||||||| ||||||| |||| |||| | |||||||||| | |||| ||||||||||||| ||||||| || ||||| ||| ||||||    
T  28925049 atacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatt 28924950  T
Q  118 tt-accttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaata 216  Q
    || ||||||| |||| |||||| | ||| |||||| |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| | |||| |    
T  28924949 tttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaaa-a 28924851  T
Q  217 gcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||| | ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  28924850 gcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgcctt 28924798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 28889519 - 28889268
Alignment:
Q  18 atacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaatt 117  Q
    ||||||| |||||||||||| ||||||| |||| |||| | |||||||||| | |||| ||||||||||||| ||||||| || ||||| ||| ||||||    
T  28889519 atacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatt 28889420  T
Q  118 tt-accttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaata 216  Q
    || ||||||| |||| |||||| | ||| |||||| |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| | |||| |    
T  28889419 tttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgcaacggcaaa-a 28889321  T
Q  217 gcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||   ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  28889320 gcaatgcaaatcaattcctaggttcttctctcttggtcttctctccttgcctt 28889268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 20820105 - 20820279
Alignment:
Q  32 atcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaattttaccttaaaaaca 131  Q
    |||||| | |||||||||| ||||||||||||||||| |||||  |||| |||||||| |||||||||||||||| ||||||||||||||||||| |||     
T  20820105 atcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatcatcattaaccctaa-ttttccaattttaccttaagaacg 20820203  T
Q  132 gttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaa 207  Q
    ||| ||||  ||| |  ||| |||| ||||||||  ||||||||||||| ||| ||||||||||||||||||||||    
T  20820204 gttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 20827205 - 20827379
Alignment:
Q  32 atcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaattttaccttaaaaaca 131  Q
    |||||| | |||||||||| ||||||||||||||||| |||||  |||| |||||||| |||||||||||||||| ||||||||||||||||||| |||     
T  20827205 atcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatcatcattaaccctaa-ttttccaattttaccttaagaacg 20827303  T
Q  132 gttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaa 207  Q
    ||| ||||  ||| |  ||| |||| ||||||||  ||||||||||||| ||| ||||||||||||||||||||||    
T  20827304 gttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28931163 - 28931092
Alignment:
Q  18 atacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaa 89  Q
    ||||||| |||||||||||| ||||||| |||| |||| | |||||||||| | |||| |||||||||||||    
T  28931163 atacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacccattttcttcaaa 28931092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 38144511 - 38144472
Alignment:
Q  225 aatcagttcctaagttcttctctcttggtcttctctcctt 264  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  38144511 aatcggttcctaagttcttctctcttggtcttctctcctt 38144472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 34830110 - 34830146
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgca 206  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34830110 tattgaaagataatcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 18407996 - 18407944
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttacctta 198  Q
    |||||| |||| ||||||||| | |||||| ||||| ||||||||||||||||    
T  18407996 ttttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 9099260 - 9099005
Alignment:
Q  11 atcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattt 110  Q
    |||| ||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  9099260 atcaacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaattt 9099161  T
Q  111 tccaattttaccttaaaaacagttaaattgatt-acttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaag 209  Q
     ||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9099160 cccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaag 9099061  T
Q  210 acaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    | |||  ||  | ||||||| |||||||| |||||||||||||||||||| ||||||||    
T  9099060 ataaagtgc--agcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 9099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 20008138 - 20007877
Alignment:
Q  10 catcatcaatacagagtaggaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaa 107  Q
    ||||| ||||| ||| || |||| |||| ||| ||||||| | ||||| |||||||||||| |||| || ||||||| |||| ||||| |||||||||||    
T  20008138 catcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 20008039  T
Q  108 ttttccaattttaccttaaaaacagttaaattgattactttt-caaaaatcatatattataactattgaaagataatctcacccttaccttagaattgca 206  Q
    ||| ||||||||||||||| ||||||| ||||||||| |||| || |||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  20008038 tttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatattatgactattgaaagatgatcccacccttaccttagaattgca 20007939  T
Q  207 aagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20007938 aagacaaa-agcacagcaaatgagttcctaagttcttctctcttggtcttctctccttgcctt 20007877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 21364670 - 21364423
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||     |||||||||| |||    
T  21364670 acatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccct-aat 21364572  T
Q  109 tttccaattttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaa 208  Q
    || ||||||||||| | ||||||||||||||| ||| |||||| |||||||||||||| | || |||| ||||||| |||||||||||| ||||||||||    
T  21364571 ttcccaattttaccat-aaaacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaa 21364473  T
Q  209 gacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctc 259  Q
    |||||| |||| | |||| || |||||| ||||||||||||||||||||||    
T  21364472 gacaaa-agcacagcaaaacaattcctaggttcttctctcttggtcttctc 21364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 23968652 - 23968405
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||     |||||||||| |||    
T  23968652 acatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccct-aat 23968554  T
Q  109 tttccaattttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaa 208  Q
    || ||||||||||| | ||||||||||||||| ||| |||||| |||||||||||||| | || |||| ||||||| |||||||||||| ||||||||||    
T  23968553 ttcccaattttaccat-aaaacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaa 23968455  T
Q  209 gacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctc 259  Q
    |||||| |||| | |||| || |||||| ||||||||||||||||||||||    
T  23968454 gacaaa-agcacagcaaaacaattcctaggttcttctctcttggtcttctc 23968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 269
Target Start/End: Original strand, 31252419 - 31252549
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaag 238  Q
    ||||| |||||| |||| |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| |  | | |  |||| |||||||||    
T  31252419 gattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgcaaagacaaagaaaacacagcaatcggttcctaag 31252518  T
Q  239 ttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||    
T  31252519 ttcttctctcttggtcttctctccttgcctt 31252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 11288721 - 11288601
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttct 245  Q
    |||||| |||| ||||||||  |  |||||||||||||| |||||||||||||||||||| |||||||| | || | | |||||||||||||| ||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgccaagacaaa-aacacagc-aatcagttcctaagctcttct 11288624  T
Q  246 ctcttggtcttctctccttgcctt 269  Q
    |||||||||||||| |||||||||    
T  11288623 ctcttggtcttctc-ccttgcctt 11288601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 15458492 - 15458560
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||| |||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 15458560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 15465087 - 15465155
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||| |||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 15465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 28288537 - 28288442
Alignment:
Q  171 attgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| | || | | |||||||||||||| | |||||||||||||||||| |||||||||    
T  28288537 attgagagatagtctcacccttaccttagaattgcaaagacaaa-aacacagc-aatcagttcctaagcttttctctcttggtcttctc-ccttgcctt 28288442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 24563475 - 24563564
Alignment:
Q  181 aatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||| |  | | |  ||||  ||||  |||||||||||||||||||||||||||||||||    
T  24563475 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaatcgattccctagttcttctctcttggtcttctctccttgcctt 24563564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 34640015 - 34639915
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||| |  | | |  ||||  |||   ||||||||||||||||||||||||||||||||    
T  34640015 tattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaatcgattctctagttcttctctcttggtcttctctccttgcct 34639916  T
Q  269 t 269  Q
    |    
T  34639915 t 34639915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 34646689 - 34646589
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||| |  | | |  ||||  |||   ||||||||||||||||||||||||||||||||    
T  34646689 tattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaatcgattctctagttcttctctcttggtcttctctccttgcct 34646590  T
Q  269 t 269  Q
    |    
T  34646589 t 34646589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 10986226 - 10986173
Alignment:
Q  153 aaatcatatattataactattgaaagataatctcacccttaccttagaattgca 206  Q
    |||| ||| ||||| | |||||||||||| ||||||||||||||||||||||||    
T  10986226 aaattatagattatgattattgaaagatagtctcacccttaccttagaattgca 10986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 24641644 - 24641612
Alignment:
Q  237 agttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||    
T  24641644 agttcttctctcttggtcttctctccttgcctt 24641612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 29097747 - 29097789
Alignment:
Q  26 taggaaatcatattaatcatcaaatgcaacattataaacctga 68  Q
    |||||||||||| |||||||||||| ||||| |||||||||||    
T  29097747 taggaaatcatactaatcatcaaatacaacagtataaacctga 29097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 19235257 - 19235002
Alignment:
Q  11 atcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattt 110  Q
    |||| ||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  19235257 atcaacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaattt 19235158  T
Q  111 tccaattttaccttaaaaacagttaaattgatt-acttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaag 209  Q
     ||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19235157 cccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgcaaag 19235058  T
Q  210 acaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    | |||  ||  | ||||||| |||||||| |||||||||||||||||||| ||||||||    
T  19235057 ataaagtgc--agcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 19235002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 17131615 - 17131857
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | |||||||||||||||||| |||| || ||||||| |||| ||||| |||||||||||||| |||||||||||||||    
T  17131615 gaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 17131714  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     ||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||    
T  17131715 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 17131814  T
Q  227 tcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17131815 tcagttcctaagttcttctctcttggtcttctctccttgcctt 17131857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 12033616 - 12033375
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | ||||||||||||||||||||||| || ||||||| |||| |||||||||||||| ||||| |||||||||||||||    
T  12033616 gaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatttcccaattttaccttaa 12033517  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     ||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||    
T  12033516 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa-agcacatcaaa 12033418  T
Q  227 tcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  12033417 tcagttcctaagttcttctctcttggtcttctctccttacctt 12033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 14865729 - 14865971
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| |||||||| || | |||||||||||||||| ||||||||| ||||||| |||| |||||||||||| | | ||| |||||||||||||||    
T  14865729 gaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaatcatcattaaccattattttcccaattttaccttaa 14865828  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     ||||||| ||||||||| |||||| |||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||    
T  14865829 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 14865928  T
Q  227 tcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14865929 tcagttcctaagttcttctctcttggtcttctctccttgcctt 14865971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 23370558 - 23370435
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttct 245  Q
    |||||| |||| ||| ||||| | |||||| ||||| || ||||||||||||||||||| | ||||||| |||| | |||||| ||||||||||||||||    
T  23370558 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttcttct 23370459  T
Q  246 ctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||    
T  23370458 ctcttggtcttctctccttgcctt 23370435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 10389502 - 10389428
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||||||||| |||| ||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  10389502 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10389428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 10414591 - 10414517
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||||||||| |||| ||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  10414591 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10414517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 10421261 - 10421187
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||||||||| |||| ||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  10421261 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 10421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 51301581 - 51301715
Alignment:
Q  136 aattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcc 234  Q
    ||||||||| |||||| |||| | ||||||| | ||||| |||||||||||||||||||||||||||||| |||||||| |  | | |  ||||  |||     
T  51301581 aattgattaattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgcgaagacaaagaaaacacagcaatcgattct 51301680  T
Q  235 taagttcttctctcttggtcttctctccttgcctt 269  Q
      |||||||||||||||||||||||||||||||||    
T  51301681 ctagttcttctctcttggtcttctctccttgcctt 51301715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 13312957 - 13312841
Alignment:
Q  138 ttgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaa 237  Q
    ||||||| ||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||   ||| ||| | || | ||||||||||||||     
T  13312957 ttgattaattttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13312860  T
Q  238 gttcttctctcttggtctt 256  Q
    |||| |||| |||| ||||    
T  13312859 gttcatctcccttgttctt 13312841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 13323896 - 13323732
Alignment:
Q  91 tcatcattaaccctaaattttccaattttaccttaaa-aacagt-taaattgattacttttcaaaaatcatatattataactattgaaagataatctcac 188  Q
    ||||||| |||||||||||  ||||||||| ||| || |||| | ||| ||||||| |||||| |||| | ||||||| | |||||||||||||||||||    
T  13323896 tcatcatcaaccctaaattc-ccaattttatcttcaagaacaatctaatttgattaattttcagaaattacatattatgattattgaaagataatctcac 13323798  T
Q  189 ccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtctt 256  Q
    |||||||||||||||| | | | ||| | |  | |||||||||||||| ||||||||| |||| ||||    
T  13323797 ccttaccttagaattgtagaaaaaaaaatc--agcaaatcagttcctaggttcttctcccttgttctt 13323732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 13302301 - 13302185
Alignment:
Q  138 ttgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaa 237  Q
    ||||||| |||||| |||| | ||||||| | |||||||||||||||||||||||||||||||||||   ||| ||| | || | ||||||||||||||     
T  13302301 ttgattaattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13302204  T
Q  238 gttcttctctcttggtctt 256  Q
    |||| |||| |||| ||||    
T  13302203 gttcatctcccttgttctt 13302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 10555350 - 10555434
Alignment:
Q  183 tctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||| ||| ||||| || |  |||||||| | |||||| |||||||||||||||||||| |||||||||    
T  10555350 tctcacccttaccttagaattgtaaacacaaa-agtacgacaaatcaatccctaagctcttctctcttggtcttctc-ccttgcctt 10555434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 24933880 - 24933823
Alignment:
Q  147 tttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattg 204  Q
    ||||| |||| ||| ||||| | |||||| ||||| ||||||||||||||||||||||    
T  24933880 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattg 24933823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 79662 - 79419
Alignment:
Q  29 gaaatcatattaatcat-caaatgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||| | ||| |||||||||||||||    
T  79662 gaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaattttaccttaa 79563  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataac-aa 225  Q
     ||||||| ||||||||| |||||| |||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||    
T  79562 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 79463  T
Q  226 atcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  79462 atcagttcctaagttcttctctcttggtcttctctccttgcctt 79419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 20851304 - 20851062
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | ||||| |||||||||||| |||| || ||||||| |||| ||||| |||||||||||||| |||||||||||||||    
T  20851304 gaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 20851205  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     ||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||    
T  20851204 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 20851105  T
Q  227 tcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  20851104 tcagttcctaagttcttctctcttggtcttctctccttgcctt 20851062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 31 - 269
Target Start/End: Original strand, 21710704 - 21710943
Alignment:
Q  31 aatcatattaatcatcaaatgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaaaaa 129  Q
    ||||||| ||| |||||| |  ||||||||||||||||| |||| || ||||||| |||| ||||| | |||||||||||| ||||||||||||||| ||    
T  21710704 aatcatactaaacatcaagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaatttcccaattttaccttaagaa 21710803  T
Q  130 cagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatca 229  Q
    ||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||    
T  21710804 cagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatca 21710903  T
Q  230 gttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21710904 gttcctaagttcttctctcttggtcttctctccttgcctt 21710943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 52 - 269
Target Start/End: Complemental strand, 20857907 - 20857689
Alignment:
Q  52 caacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaaaaacagttaaattgattacttttc 150  Q
    ||||| |||||||||||| |||| || ||||||| |||| ||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  20857907 caacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttc 20857808  T
Q  151 aaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctctt 250  Q
    | |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  20857807 agaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctctt 20857708  T
Q  251 ggtcttctctccttgcctt 269  Q
    |||||||||||||||||||    
T  20857707 ggtcttctctccttgcctt 20857689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 21706183 - 21706401
Alignment:
Q  52 caacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaaaaacagttaaattgattacttttc 150  Q
    ||||| |||||||||||| |||| || ||||||| |||| ||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  21706183 caacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttc 21706282  T
Q  151 aaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctctt 250  Q
    | |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  21706283 agaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctctt 21706382  T
Q  251 ggtcttctctccttgcctt 269  Q
    |||||||||||||||||||    
T  21706383 ggtcttctctccttgcctt 21706401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 16090958 - 16091201
Alignment:
Q  29 gaaatcatattaatcat-caaatgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||| | ||| ||||||||||||||     
T  16090958 gaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaattttaccttag 16091057  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataac-aa 225  Q
     ||||||| |||||||||  ||||| |||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||    
T  16091058 gaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 16091157  T
Q  226 atcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16091158 atcagttcctaagttcttctctcttggtcttctctccttgcctt 16091201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 29181281 - 29181038
Alignment:
Q  29 gaaatcatattaatcat-caaatgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||||||| ||||| ||||||||||| |||||||||||||| ||||||| |||| |||||||||||||| | ||| | |||||||||||||    
T  29181281 gaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaattttaccttaa 29181182  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataac-aa 225  Q
     || |||| ||||||||| |||||| |||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||    
T  29181181 gaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 29181082  T
Q  226 atcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29181081 atcagttcctaagttcttctctcttggtcttctctccttgcctt 29181038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 20906632 - 20906391
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | ||||||||||||| ||||||||| || ||||||| |||| |||||||||||||| ||||  |||||||||||||||    
T  20906632 gaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaattc-ccaattttaccttaa 20906534  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     || |||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||  | ||||    
T  20906533 gaatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaggacaaatagctcagcaaa 20906434  T
Q  227 tcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    || |||||||||||||||||||||||||||||| |||||||||    
T  20906433 tccgttcctaagttcttctctcttggtcttctccccttgcctt 20906391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 2465226 - 2465474
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| | |||||||||||||||||||| |   |||||||||| |||    
T  2465226 acatcaacaatacagagtaggaaatcatattaatcatcaaatataacattataaacctaaatcttacacattttcttcaaaattgccattaaccct-aat 2465324  T
Q  109 tttccaa-ttttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaa 207  Q
    || |||| ||||||| ||||||||||||||||| ||| |||||| |||||||||||||| | ||||||| ||| ||| ||||||||||||||||||||||    
T  2465325 ttcccaatttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccacccttaccttagaattgcaa 2465424  T
Q  208 agacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctc 259  Q
    ||| |||  ||  | |||| || || ||||| ||||||||||||||||||||    
T  2465425 agataaagtgc--agcaaaccaatttctaagctcttctctcttggtcttctc 2465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 2971222 - 2971379
Alignment:
Q  112 ccaattttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagac 211  Q
    ||||||||||||||| ||||||| ||||||||| |||||| |||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  2971222 ccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttaccttagaattgcaaagac 2971321  T
Q  212 aaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  2971322 aaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 2971379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 3857556 - 3857308
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |   |||||||||| |||    
T  3857556 acatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccct-aat 3857458  T
Q  109 tttccaa---ttttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgc 205  Q
    || ||||   ||||||| ||||||||||||||||| ||| |||||| |||||||||||||| | ||||| ||||| ||| ||||||||||||||||||||    
T  3857457 ttcccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 3857359  T
Q  206 aaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctc 259  Q
     |||| |||  ||  | |||| || || ||||| ||||||||||||||||||||    
T  3857358 -aagataaagtgc--agcaaaccaatttctaagctcttctctcttggtcttctc 3857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 14319688 - 14319559
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagt 239  Q
    ||||| |||||| |||| ||| |||| ||  |||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||| ||||||||||    
T  14319688 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 14319589  T
Q  240 tcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||| ||||||||||||||||||    
T  14319588 tcttctctcttagtcttctctccttgcctt 14319559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 14230808 - 14230906
Alignment:
Q  171 attgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  14230808 attgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacgacaaatccgttcctaagttctcctctcttggtcttctctccttgcctt 14230906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 14567206 - 14567329
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttct 245  Q
    |||||| ||| ||||||||||||  |||||| | ||  ||||||||||||||||||||| | ||||||| |||| | |||||| ||||||||||||||||    
T  14567206 ttttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttcttct 14567305  T
Q  246 ctcttggtcttctctccttgcctt 269  Q
    ||||||||||| ||||||||||||    
T  14567306 ctcttggtcttttctccttgcctt 14567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 31155396 - 31155464
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||| |||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 31155464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 2966848 - 2966925
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttc-ttcaaattcatcattaaccct 104  Q
    ||||||||| ||||||||||| | |||||||| |||||||||||||| || ||||| ||||||  |||||||||||||    
T  2966848 gaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccct 2966925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 11382923 - 11382871
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttacctta 198  Q
    |||||| |||| ||||||||| | |||||| ||||| ||||||||||||||||    
T  11382923 ttttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 11389400 - 11389348
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttacctta 198  Q
    |||||| |||| ||||||||| | |||||| ||||| ||||||||||||||||    
T  11389400 ttttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 13679496 - 13679548
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttacctta 198  Q
    ||||||||||| |||||| || |  ||||||||||| ||||||||||||||||    
T  13679496 ttttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 21231012 - 21230952
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgca 206  Q
    |||||| |||| ||||| ||| | |||||| ||||| |||||||||||||||||| |||||    
T  21231012 ttttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgca 21230952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 24320842 - 24320600
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | ||||| |||||||||||| | || || ||||||| |||| ||||| |||||||||||||| |||||||||||||||    
T  24320842 gaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 24320743  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     ||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||    
T  24320742 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 24320643  T
Q  227 tcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24320642 tcagttcctaagttcttctctcttggtcttctctccttgcctt 24320600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 29643446 - 29643386
Alignment:
Q  138 ttgattacttttcaaaaatcatatattataactattgaaagataatctcacccttacctta 198  Q
    ||||||| |||||| |||| | ||||||| | |||||||||||||||||||||||||||||    
T  29643446 ttgattaattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 44477625 - 44477749
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttc 244  Q
    |||||| |||| ||| ||||| | |||||| ||||| ||||||||||||||||||||||  |||||||| |  | | |  ||||  |||   ||||||||    
T  44477625 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagcaatcgattctctagttcttc 44477724  T
Q  245 tctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||    
T  44477725 tctcttggtcttctctccttgcctt 44477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 44492783 - 44492907
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttc 244  Q
    |||||| |||| ||| ||||| | |||||| ||||| ||||||||||||||||||||||  |||||||| |  | | |  ||||  |||   ||||||||    
T  44492783 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagcaatcgattctctagttcttc 44492882  T
Q  245 tctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||    
T  44492883 tctcttggtcttctctccttgcctt 44492907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 59 - 269
Target Start/End: Original strand, 135352 - 135563
Alignment:
Q  59 ataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttacc-ttaaaaacagttaaattgattacttttcaaaaat 156  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||| |||| | |||||||||| |||| ||||||| ||||||||| |||||| ||||    
T  135352 ataaacctgattcttacaccttttctttcaaaatcatcattaacccttaattct-caattttacctttaagaacagttcaattgattaattttcagaaat 135450  T
Q  157 catatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtctt 256  Q
     ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  135451 tatatattatgactattgaaagataatctcacgcttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagctcttctctcttggtctt 135550  T
Q  257 ctctccttgcctt 269  Q
    |||||||||||||    
T  135551 ctctccttgcctt 135563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 39 - 269
Target Start/End: Original strand, 892 - 1121
Alignment:
Q  39 taatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaattttaccttaaaaacagttaaat 138  Q
    |||||||||||  |||| |||||||||| | |||||||||||||||||||| ||  |||||||||||| ||| ||||||||||| ||| |||||||||||    
T  892 taatcatcaaacacaactttataaacctaaatcttacacattttcttcaaaatcgccattaaccctaattttcccaattttaccataagaacagttaaat 991  T
Q  139 tgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaag 238  Q
    || ||| |||||| |||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| |||| | ||||||| |||||| |    
T  992 tgcttaattttcagaaatcatatattatcactattgagagatgatcccacccttaccttagaattgcaaagacaaa-agcacagcaaatcaattcctagg 1090  T
Q  239 ttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||    
T  1091 ttcttctctcttggtcttctctccttgcctt 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 50143 - 49899
Alignment:
Q  29 gaaatcatattaatcat-caaatgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaatttt-acctta 125  Q
    ||||||||| ||||| | |||||  ||||||||||||||||||||||||| ||||||| |||| |||||||||||||| | ||| |||||||| ||||||    
T  50143 gaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaatttttacctta 50044  T
Q  126 aaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataac-a 224  Q
    | ||||||| ||||||||| |||| | |||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |    
T  50043 agaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacaacaa 49944  T
Q  225 aatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||    
T  49943 aatcagttcctaagttcttctctcttggttttctctctttgcctt 49899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 91394 - 91144
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |   |||||||||| |||    
T  91394 acatcaccaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccct-aat 91296  T
Q  109 tttccaa---ttttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgc 205  Q
    || ||||   ||||||| ||||||||||||||||| ||| |||||| |||||||||||||| | ||||||||||| ||| ||||||||||||||||||||    
T  91295 ttcccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgc 91196  T
Q  206 aaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctc 259  Q
    ||||| |||  ||  | |||| || || ||||| ||||||||||||||||||||    
T  91195 aaagataaagtgc--agcaaaccaatttctaagctcttctctcttggtcttctc 91144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 97120 - 96870
Alignment:
Q  9 acatcatcaatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaat 108  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |   |||||||||| |||    
T  97120 acatcaccaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccct-aat 97022  T
Q  109 tttccaa---ttttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgc 205  Q
    || ||||   ||||||| ||||||||||||||||| ||| |||||| |||||||||||||| | ||||||||||| ||| ||||||||||||||||||||    
T  97021 ttcccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttagaattgc 96922  T
Q  206 aaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctc 259  Q
    ||||| |||  ||  | |||| || || ||||| ||||||||||||||||||||    
T  96921 aaagataaagtgc--agcaaaccaatttctaagctcttctctcttggtcttctc 96870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 59 - 269
Target Start/End: Complemental strand, 2053 - 1842
Alignment:
Q  59 ataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaaa-aacagttaaattgattacttttcaaaaat 156  Q
    |||||||| |||||||||| ||||||| |||| |||||||||||||| ||||  |||||||||| || || ||||||| ||||||||| |||||| ||||    
T  2053 ataaacctaattcttacaccttttctttcaaaatcatcattaacccttaattc-ccaattttactttcaagaacagttcaattgattaattttcagaaat 1955  T
Q  157 catatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtctt 256  Q
     ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||| | |||||| |||||||||||||||||||||||||||    
T  1954 tatatattatgactattgaaagataatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtctt 1855  T
Q  257 ctctccttgcctt 269  Q
    |||||||||||||    
T  1854 ctctccttgcctt 1842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 16147002 - 16146791
Alignment:
Q  29 gaaatcatattaatcat-caaatgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||| | ||| | |||||||||||||    
T  16147002 gaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaattttaccttaa 16146903  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataac-aa 225  Q
     ||||||| ||||||||| |||||| |||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||    
T  16146902 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaatagcacagcaaa 16146803  T
Q  226 atcagttcctaa 237  Q
    ||||||||||||    
T  16146802 atcagttcctaa 16146791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 53483731 - 53483831
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttctctcttggtcttctctccttgcct 268  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||| |  | | |  ||||  |||   ||||||||||||||||||||||||||| ||||    
T  53483731 tattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaatcgattctctagttcttctctcttggtcttctctcctagcct 53483830  T
Q  269 t 269  Q
    |    
T  53483831 t 53483831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 27906263 - 27906328
Alignment:
Q  141 attacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgca 206  Q
    |||| |||||| |||| ||| ||||| |  |||||||||||||| |||||||| ||||||||||||    
T  27906263 attaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 25181101 - 25180880
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | ||| | ||||||||||||   || || ||||||| |||| ||||| |||||||||||||| |||||||||||||||    
T  25181101 gaaatcatactaaacatcaaagtacaaaaatataaacctgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 25181002  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     ||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||    
T  25181001 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaa 25180902  T
Q  227 tcagttcctaagttcttctctc 248  Q
    ||||||||||||||||||||||    
T  25180901 tcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 10460 - 10679
Alignment:
Q  29 gaaatcatattaatcatcaaa-tgcaacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||| | ||||| ||||||||| || | || || ||||||| |||| ||||| |||||||||||||| |||||||||||||||    
T  10460 gaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 10559  T
Q  127 aaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaa 226  Q
     |||| || ||||||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |||| | ||||    
T  10560 gaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatttcaaagacaaaaagcacagcaaa 10659  T
Q  227 tcagttcctaagttcttctc 246  Q
    ||||||||||||| ||||||    
T  10660 tcagttcctaagtccttctc 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 27207778 - 27207649
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagt 239  Q
    ||||| |||||| |||| ||| |||| ||  |||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||| ||||||||||    
T  27207778 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 27207679  T
Q  240 tcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||    
T  27207678 tcttctctcttggtcttctctccttgcctt 27207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 26885208 - 26885307
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| |||| | |||||| |||||||||||||||||||||||| |||||||||||||||    
T  26885208 tattgaaagataatcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagttcttctctcttggttttctctccttgcctt 26885307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 23168324 - 23168229
Alignment:
Q  173 tgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||| ||||||||||||||||||||| | ||||| |||| | |||| | || |||||||||||||||||||||||||||||||||||||    
T  23168324 tgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttctctcttggtcttctctccttgcctt 23168229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 23579581 - 23579486
Alignment:
Q  173 tgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||| ||||||||||||||||||||| | ||||| |||| | |||| | || |||||||||||||||||||||||||||||||||||||    
T  23579581 tgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttctctcttggtcttctctccttgcctt 23579486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 27366566 - 27366477
Alignment:
Q  181 aatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||||| |  | | |  ||||  ||||  |||||||||||||||||||||||||||||||||    
T  27366566 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaatcgattccctagttcttctctcttggtcttctctccttgcctt 27366477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 5706045 - 5706008
Alignment:
Q  177 agataatctcacccttaccttagaattgcaaagacaaa 214  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  5706045 agatagtctcacccttaccttagaattgcgaagacaaa 5706008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 5705984 - 5705952
Alignment:
Q  237 agttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||| |||||    
T  5705984 agttcttctctcttggtcttctctcctagcctt 5705952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 16247 - 16059
Alignment:
Q  16 caatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaa 115  Q
    ||||| ||| ||| |||||||| |||||||||||| |||||| || |||||||||||| ||||||||||||||| |||||||||||||||||  ||||||    
T  16247 caatatagattagaaaatcatactaatcatcaaatacaacatcatgaacctgattcttgcacattttcttcaaaatcatcattaaccctaaa--ttccaa 16150  T
Q  116 -ttttaccttaaaaacagttaaattgatt-acttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattg 204  Q
     ||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16149 tttttatcttaaaaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattg 16059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 1227 - 1425
Alignment:
Q  16 caatacagagtaggaaatcatattaatcatcaaatgcaacattataaacctgattcttacacattttcttcaaattcatcattaaccctaaattttccaa 115  Q
    ||||||||| |||||||||||| |||||||||| |  |||||| ||||||||| |||||| ||||||||||||| |||||||||  ||||| ||| ||||    
T  1227 caatacagattaggaaatcatactaatcatcaattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttcccaa 1326  T
Q  116 ttttaccttaaaaacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    ||||||||||| ||||||||||||| ||| |||||| ||| |||||||||  |||||||||||  |||| |||||||||||||||||||||||||||||    
T  1327 ttttaccttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgcaaagacaaa 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 10231 - 10364
Alignment:
Q  136 aattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcct 235  Q
    ||||||||| |||||| |||| | ||||||| | ||||| ||||||||||||||||||||||||||||| | ||||||| |||| | |||||| ||||||    
T  10231 aattgattaattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcct 10330  T
Q  236 aagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||||||    
T  10331 aagttcttctctcttggtcttctctccttgcctt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 170 - 269
Target Start/End: Complemental strand, 493057 - 492958
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  493057 tattgaaagataatctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttctctccttgcctt 492958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 9219 - 9396
Alignment:
Q  29 gaaatcatattaatcatcaaatg-caacattataaacctgattcttacacattttctt-caaattcatcattaaccctaaattttccaattttaccttaa 126  Q
    ||||||||| ||| ||||||||  |||||  |||||||| |||||||||| ||||||| |||| |||||||||||||| ||||  |||||||||| || |    
T  9219 gaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaattc-ccaattttactttta 9317  T
Q  127 a-aacagttaaattgattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattg 204  Q
    | ||||||| ||||||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  9318 agaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 3461 - 3332
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagt 239  Q
    ||||| |||||| |||| |||||||| |   ||||||||||||| |||||||||||||||||||||||||||||| ||||   |||||| ||||||||||    
T  3461 gattaattttcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattgcaaagacaaaaagcacggcaaatccgttcctaagt 3362  T
Q  240 tcttctctcttggtcttctctccttgcctt 269  Q
    ||| |||||||||||||||||| |||||||    
T  3361 tctcctctcttggtcttctctcgttgcctt 3332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 10248 - 10125
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttct 245  Q
    |||||| |||| ||| ||||| | |||||| ||||| || ||||||||||||||||||| | ||||||| |||| | |||||| ||||||||||||||||    
T  10248 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttcttct 10149  T
Q  246 ctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||    
T  10148 ctcttggtcttctctccttgcctt 10125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 1578 - 1455
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttct 245  Q
    |||||| |||| ||| ||||| | |||||| ||||| || ||||||||||||||||||| | ||||||| |||| | |||||| ||||||||||||||||    
T  1578 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttcttct 1479  T
Q  246 ctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||    
T  1478 ctcttggtcttctctccttgcctt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 268
Target Start/End: Original strand, 6 - 125
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcataacaaatcagttcctaagttcttct 245  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||  ||  | ||| ||| |||||||| ||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgcaaagataaagtgc--agcaagtcaattcctaagctcttct 103  T
Q  246 ctcttggtcttctctccttgcct 268  Q
    |||||||||||||| ||||||||    
T  104 ctcttggtcttctc-ccttgcct 125  T

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Target: scaffold0609 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 5916 - 5786
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaag 238  Q
    ||||| |||||| |||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| |  | | |  |||| |||||  ||    
T  5916 gattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaaacacagcaatcggttccctag 5817  T
Q  239 ttcttctctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||||||||    
T  5816 ttcttctctcttggtcttctctccttgcctt 5786  T

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Target: scaffold0249 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 13947 - 13879
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||| |||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaa 13879  T

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Target: scaffold0099 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 12836 - 13019
Alignment:
Q  26 taggaaatcatattaatcat-caaatgcaacattataaacct-gattctt-acacattttcttcaaattcat-cattaaccctaaattttcc--aatttt 119  Q
    |||||||||||| ||||||| ||||| ||||||||||||||| ||||||| |||||||| ||||| | |||| |||||||||||||||| ||  | ||||    
T  12836 taggaaatcatactaatcatacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaattttt 12935  T
Q  120 acc-ttaaaaacagttaaa---ttgatt-acttttcaaaaatcatatattataactattg-aaagataatctcacccttacctt 197  Q
    ||| |||| ||||||||||   | |||| | |||| | ||||||||||||| |||||||| |||||||||| ||||||||||||    
T  12936 acctttaagaacagttaaaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

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Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 111688 - 111812
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgcaaagacaaatagcata-acaaatcagttcctaagttcttc 244  Q
    |||||| |||| ||| ||||| | |||||| ||||| ||||||||||||||||||||||| |||||||| |  | | |  ||||  |||   ||||||||    
T  111688 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagcaatcgattctctagttcttc 111787  T
Q  245 tctcttggtcttctctccttgcctt 269  Q
    |||||||||||||||||||||||||    
T  111788 tctcttggtcttctctccttgcctt 111812  T

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Target: scaffold0261 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 23628 - 23562
Alignment:
Q  140 gattacttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgca 206  Q
    ||||| |||||| |||| ||| ||||| |  ||| |||||||||| |||||||||||||||||||||    
T  23628 gattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgca 23562  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 18172 - 18225
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttag 199  Q
    ||||||||||| ||| ||||| | |||||| ||||| |||||||||||||||||    
T  18172 ttttcaaaaattatagattatgattattgagagatagtctcacccttaccttag 18225  T

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Target: scaffold0317 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 1389 - 1441
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttacctta 198  Q
    ||||||||||| |||||| || |  ||||||||||| ||||||||||||||||    
T  1389 ttttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 45235 - 45203
Alignment:
Q  237 agttcttctctcttggtcttctctccttgcctt 269  Q
    ||||||||||||||||||||||||||| |||||    
T  45235 agttcttctctcttggtcttctctcctagcctt 45203  T

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Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 45303 - 45259
Alignment:
Q  170 tattgaaagataatctcacccttaccttagaattgcaaagacaaa 214  Q
    |||||| ||||| |||||||||||||||||| |||| ||||||||    
T  45303 tattgagagatagtctcacccttaccttagatttgcgaagacaaa 45259  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 40584 - 40524
Alignment:
Q  146 ttttcaaaaatcatatattataactattgaaagataatctcacccttaccttagaattgca 206  Q
    |||||| |||| ||||| ||| | |||||| ||||| |||||||||||||||||| |||||    
T  40584 ttttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgca 40524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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