View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_high_13 (Length: 250)
Name: NF16355_high_13
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_high_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 47045949 - 47045707
Alignment:
| Q |
8 |
ccaagaatatgtgaaaataaataagtagtcactaaagtatatgaaaattcatcatgttagtatctaagacctttgtagcaccgatacccctgatcaaagg |
107 |
Q |
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| T |
47045949 |
ccaacaatatgtgaaaatagataagtagtcactaaagtatatgaaaattcatcatgttagtatctaagacctttgtagcaccgatacccctgatcaaagg |
47045850 |
T |
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| Q |
108 |
tgtgttcaacacggacaaaacactggaacatatgatttcgttcaaatcattcattttctcaaattattaccggatatagtgttgtgcctttgttcatagt |
207 |
Q |
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| T |
47045849 |
tgtgttcaacacggacacaacactggcacatatgatttcgttcaaatcattcattttctcaaattattaccggatatagtgttgtgcctttgttcatagt |
47045750 |
T |
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| Q |
208 |
tcatactctaagactaacatagatatatttactaagtaggact |
250 |
Q |
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| T |
47045749 |
tcatactctaagactaacatagatatatttactaagtaggact |
47045707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 20204288 - 20204247
Alignment:
| Q |
135 |
acatatgatttcgttcaaatcattcattttctcaaattatta |
176 |
Q |
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| T |
20204288 |
acatgtgattacgttcaaatgattcattttctcaaattatta |
20204247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 6074076 - 6074035
Alignment:
| Q |
135 |
acatatgatttcgttcaaatcattcattttctcaaattatta |
176 |
Q |
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| T |
6074076 |
acatatgattacgttcaaataattcattttctcaaattatta |
6074035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 6073793 - 6073755
Alignment:
| Q |
138 |
tatgatttcgttcaaatcattcattttctcaaattatta |
176 |
Q |
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| T |
6073793 |
tatgattacgttcaaataattcattttctcaaattatta |
6073755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 19636919 - 19636954
Alignment:
| Q |
33 |
tagtcactaaagtatatgaaaattcatcatgttagt |
68 |
Q |
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| T |
19636919 |
tagtccctaaagtatatgaaaattcatcatgttagt |
19636954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 843151 - 843194
Alignment:
| Q |
135 |
acatatgatttcgttcaaatcattcattttctcaaattattacc |
178 |
Q |
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| T |
843151 |
acatgtgattacgttcaaataattcattttctcaaattattacc |
843194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 51874791 - 51874832
Alignment:
| Q |
33 |
tagtcactaaagtatatgaaaattcatcatgttagtatctaa |
74 |
Q |
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| T |
51874791 |
tagtcactaaagtatatgaaaattcatcaatttagtctctaa |
51874832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 21768644 - 21768612
Alignment:
| Q |
146 |
cgttcaaatcattcattttctcaaattattacc |
178 |
Q |
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| T |
21768644 |
cgttcaaataattcattttctcaaattattacc |
21768612 |
T |
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