View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_high_2 (Length: 436)
Name: NF16355_high_2
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 205 - 419
Target Start/End: Original strand, 7233690 - 7233904
Alignment:
| Q |
205 |
catgtgttttattcttgtttgctaaatttggagagcatggtatgatgtggattagagtctcatgtattctattcaactattttgttacaaagctgtgtgt |
304 |
Q |
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| T |
7233690 |
catgcgttttattcttgtttgctaaatttggagagcatggtatgatatggattagagtctcgtgtattctattcaactattttgttacaaagctgtgtgt |
7233789 |
T |
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| Q |
305 |
tatgttgccaatctatgggttttatttgttgtcttgcctctttttctatgctctgcatgttttcattgcggaatcaatctaacaatattgcttttgtcac |
404 |
Q |
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| T |
7233790 |
tatgttgccaatctatgggttttatttgttgtcttgcctctttttctatgctctgcatgttttcattgcggaatcaatctaacaatattgcttctgtcac |
7233889 |
T |
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| Q |
405 |
atctttggttagtat |
419 |
Q |
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| T |
7233890 |
atctttggttagtat |
7233904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 7233358 - 7233560
Alignment:
| Q |
13 |
atactcttattgatgttaattttttcatttgaaaccagaaccaagtctactcaagaatagaagttatagatgttgggttttgcnnnnnnnnngatggtgg |
112 |
Q |
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| T |
7233358 |
atactcttattgatgttaattttttcatttgaaaccagaaccaagtctactcaagaatagaagttatagatgttgggttttgc-aaaaaaaggatggtgg |
7233456 |
T |
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| Q |
113 |
agaatacaaaaggtggtgaagaatctgtgaagcataagttttg----------ggatttaaaatttgatggcaatgcatgaatgcactttaacaagaact |
202 |
Q |
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| T |
7233457 |
agaatacaaaaggtggtgaagaatctgtgaagcataagttttgccatgagaccggatttaaaatttgatggcaatgcatgaatgcactttaacaagaact |
7233556 |
T |
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| Q |
203 |
caca |
206 |
Q |
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|||| |
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| T |
7233557 |
caca |
7233560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 7120226 - 7120289
Alignment:
| Q |
32 |
ttttttcatttgaaaccagaaccaagtctactcaagaatagaagttatagatgttgggttttgc |
95 |
Q |
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| T |
7120226 |
ttttttcagttgaaacccgaaccaagttcacacaagagtagaagttatacatgttgagttttgc |
7120289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 12115187 - 12115226
Alignment:
| Q |
229 |
aatttggagagcatggtatgatgtggattagagtctcatg |
268 |
Q |
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| T |
12115187 |
aatttggagagcacggtttgatgtggattagagtctcatg |
12115226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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