View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_high_5 (Length: 398)
Name: NF16355_high_5
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_high_5 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 31952 - 31570
Alignment:
| Q |
7 |
tcgaataatatttgacaaaaatatagactgttaannnnnnnctctcacaatgcatgaacaacctgtaattgctttgagagtgcttgaatagggttcctct |
106 |
Q |
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| T |
31952 |
tcgaagaaaatttgacaaaaata--gactgttaatttttttctctcaaaatgcatgaacaacctgtaattgctttgagagtgcttgaataggattcctct |
31855 |
T |
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| Q |
107 |
tcaaatacatcataagagactgcgagtttcatgtgatatgtttacgcaccataaacaatcattatcaatctacaccctaactgcactgaatatagccctt |
206 |
Q |
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| T |
31854 |
tcaaatacatcataagagactgcgagtttcatgtgatgtgtttacacgccataaacaatcattatcaatctacaccctaactgcactgaatatagccctt |
31755 |
T |
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| Q |
207 |
ttcgatcatcaatccaaatcaaatgatcctcttggactaatgcaaacagcggtgtatatatgatagtatgcgccacttcaactgaaaacaaagaggaaac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31754 |
ttcgatcatcaatccaaatcaaatgatcctcttggactaatgcaaacagcggtgtatctatgatagtttgcgccacttcaactgaaaacaaagaggaaac |
31655 |
T |
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| Q |
307 |
tttgtcaatatcacatctttattccccaacaattattaaatcagtgacagtcaattcatacacactttgattttcgaggagaaga |
391 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31654 |
tttgtcaatatcacatctttattccccaacaatcattaaatcagtgacagtcaattcatacacactttgatttttgaggagaaga |
31570 |
T |
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