View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_high_6 (Length: 381)
Name: NF16355_high_6
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 8926031 - 8925659
Alignment:
| Q |
1 |
tcatccaagagggctctgaagaacaaacatcaataaaatacgagcaatgtgtttactgaacattatcgaaaattagagaaagtaaaggaaacaactatgt |
100 |
Q |
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| T |
8926031 |
tcatccaagagggttctgaagaacaaacatcaataaaatacgagcaatgtgtttactgaacattatcgaaaattagagaaagtaaaggaaacgactatgt |
8925932 |
T |
|
| Q |
101 |
attaattaacaagttttcattggctgtaacacctgtacagttagaacttgaggagcagctgcatttggcatccccaaaattttgctaaaaatctgatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925931 |
attaattaacaagttttcattggctgtaacacctgtacagttagaacttgaggagcagctgcatttggcatccccaaaattttgctaaaaatctgatttt |
8925832 |
T |
|
| Q |
201 |
aagttgaaacttccattcaataattctaaatttgtgtctatccatatgccacagatggaagccagcataaccatattttgtcaccttcatttgcagatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8925831 |
aagttgaaacttccattcaataattctaaatttgtgtctatccatatgccacagatggaagccggcataaccatattttgtcaccttcatttgcagatgt |
8925732 |
T |
|
| Q |
301 |
ttttacagttaatgtttcatgttatgttatgatcttgtattgatatttatgcttttaaggactattgatgatg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925731 |
ttttacagttaatgtttcatgttatgttatgatcttgtattgatatttatgcttttaaggactattgatgatg |
8925659 |
T |
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