View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16355_low_1 (Length: 599)

Name: NF16355_low_1
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16355_low_1
NF16355_low_1
[»] chr6 (3 HSPs)
chr6 (12-599)||(34216645-34217240)
chr6 (242-297)||(31437549-31437604)
chr6 (155-189)||(14385448-14385482)
[»] chr3 (2 HSPs)
chr3 (61-290)||(21093356-21093584)
chr3 (62-113)||(14679836-14679887)
[»] chr7 (3 HSPs)
chr7 (195-367)||(11482726-11482906)
chr7 (61-142)||(11482902-11482983)
chr7 (392-456)||(11482645-11482709)
[»] chr8 (4 HSPs)
chr8 (455-530)||(14621911-14621986)
chr8 (559-596)||(9684711-9684748)
chr8 (155-189)||(17271738-17271772)
chr8 (154-190)||(45270546-45270582)
[»] chr4 (2 HSPs)
chr4 (87-190)||(19551447-19551550)
chr4 (154-189)||(3009039-3009074)
[»] scaffold0061 (1 HSPs)
scaffold0061 (61-113)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (61-113)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (61-113)||(20380961-20381013)
chr2 (61-111)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (154-189)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (62-113)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (62-113)||(31435-31486)
[»] chr5 (1 HSPs)
chr5 (236-296)||(13644669-13644729)


Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 12 - 599
Target Start/End: Original strand, 34216645 - 34217240
Alignment:
Q  12 acatcatcaagtggtgtagaagagagtgtctgttcttgcaacagagatatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216645 acatcattaagtggtgtagaagagagtgtctgttcttgcaacagagacatatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 34216744  T
Q  112 acagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggta 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216745 acggatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggta 34216844  T
Q  212 ccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatttgttcaca------- 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||           
T  34216845 ccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccatgccaagcggtaccattttccatttattcacagtcttcc 34216944  T
Q  305 -tacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggttagacgtccccagagagcattttgacattccgccaa 403  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34216945 atacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggtcagacgtccccagagagcattttgacattccgccaa 34217044  T
Q  404 tcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttgaaacattatgattcatatatgttttagatctatttcatgtatcactgc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217045 tcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttgaaacattatgattcatatatgttttagatctatttcatgtatcactgc 34217144  T
Q  504 gagtatgatggaaaaatattttttactcgccggttcctatagataaaattcaccattgatgagaggaacaaaacagatggggtctcaccttatctc 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217145 gagtatgatggaaaaatattttttactcgccggttcctatagataaaattcaccattgatgagaggaacaaaacagatggggtctcaccttatctc 34217240  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 31437549 - 31437604
Alignment:
Q  242 gccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccattt 297  Q
    |||||||||||||||||||| ||||| ||||| |||||||  ||||||||||||||    
T  31437549 gccgactcaaaatgaaaatcataatatccccttccaagcgacaccattttccattt 31437604  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
Q  155 ttaaaatccttcgtccattgggagagacgaaggag 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  14385448 ttaaaatccttcgtccattgggagaggcgaaggag 14385482  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 61 - 290
Target Start/End: Complemental strand, 21093584 - 21093356
Alignment:
Q  61 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaa 160  Q
    |||||||||||| ||  ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | |  |||     
T  21093584 tatttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaag 21093485  T
Q  161 tccttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaat 260  Q
    || ||   ||||||||||| |||||||||| ||||| | ||||  || |||| |||||||||||| ||  |||||||||| |||||||||||||| || |    
T  21093484 tcttttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatg-aagt 21093386  T
Q  261 cgtaatagcccctgccaagcggtaccattt 290  Q
    | ||||| ||||| |||||||| |||||||    
T  21093385 cataataaccccttccaagcggcaccattt 21093356  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 14679836 - 14679887
Alignment:
Q  62 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 113  Q
    ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  14679836 atttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac 14679887  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 195 - 367
Target Start/End: Complemental strand, 11482906 - 11482726
Alignment:
Q  195 gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttcca 294  Q
    |||||||||||| | ||||||  |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||| | |||  |||||||||||||    
T  11482906 gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagccccttcaaagtagtaccattttcca 11482807  T
Q  295 tttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggt 367  Q
    ||| ||||        ||||||||||| |||||||||||| |||  ||  | || |||||||||| ||||||||| |||||    
T  11482806 tttattcatagtcttccatacttttccgagcttagtaaccgaattctgagctatgtatggcttgttgcccttatttaaggt 11482726  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 11482983 - 11482902
Alignment:
Q  61 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc 142  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| ||||||||||||    
T  11482983 tatttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc 11482902  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 11482709 - 11482645
Alignment:
Q  392 acattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttga 456  Q
    |||||| |||||| |||| | ||||||| |||||||||||||||| || | ||||||| ||||||    
T  11482709 acattctgccaatacttttgtgtattcttcctgaccaattctgatgcataacgcgtcaaccttga 11482645  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 455 - 530
Target Start/End: Complemental strand, 14621986 - 14621911
Alignment:
Q  455 gaaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttact 530  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||  |||||  || ||||||||||||||||||    
T  14621986 gaaacattatgattcttatatgttttagatcaatttcatgtatcacaacgagtgggagggaaaaatattttttact 14621911  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 559 - 596
Target Start/End: Complemental strand, 9684748 - 9684711
Alignment:
Q  559 ttgatgagaggaacaaaacagatggggtctcaccttat 596  Q
    |||||||||||||||||| |||||||||||||||||||    
T  9684748 ttgatgagaggaacaaaatagatggggtctcaccttat 9684711  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
Q  155 ttaaaatccttcgtccattgggagagacgaaggag 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  17271772 ttaaaatccttcgtccattgggagaggcgaaggag 17271738  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 45270546 - 45270582
Alignment:
Q  154 attaaaatccttcgtccattgggagagacgaaggaga 190  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45270546 attaaaatccttcgtccattgagaaagacgaaggaga 45270582  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
Q  87 aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag 186  Q
    |||||||||| || || |||||||| |  ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| |||||||||||    
T  19551550 aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag 19551451  T
Q  187 gaga 190  Q
    ||||    
T  19551450 gaga 19551447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
Q  154 attaaaatccttcgtccattgggagagacgaaggag 189  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3009039 attaaaatccttcgtccattgggagaggcgaaggag 3009074  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 38137 - 38085
Alignment:
Q  61 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 113  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  38137 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 38085  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 160642 - 160694
Alignment:
Q  61 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 113  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  160642 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 160694  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 20381013 - 20380961
Alignment:
Q  61 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 113  Q
    |||||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  20381013 tatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 20380961  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 25976639 - 25976689
Alignment:
Q  61 tatttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaa 111  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| || |||||    
T  25976639 tatttccttcaaggttcgttcccgccaatactcttgcggtaactccaccaa 25976689  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 874 - 839
Alignment:
Q  154 attaaaatccttcgtccattgggagagacgaaggag 189  Q
    ||||||||||||||||||||||||||| ||||||||    
T  874 attaaaatccttcgtccattgggagaggcgaaggag 839  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 12141 - 12090
Alignment:
Q  62 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 113  Q
    ||||||||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  12141 atttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac 12090  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 31435 - 31486
Alignment:
Q  62 atttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 113  Q
    ||||||||||||||   |||||||||||| ||||||||||| ||||||||||    
T  31435 atttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac 31486  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 13644669 - 13644729
Alignment:
Q  236 tcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatt 296  Q
    ||||| ||||| ||||||||||| || ||||| ||| ||||||| || |||||||||||||    
T  13644669 tcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccatt 13644729  T

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