View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16355_low_10 (Length: 345)

Name: NF16355_low_10
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16355_low_10
NF16355_low_10
[»] chr4 (5 HSPs)
chr4 (115-327)||(11119640-11119852)
chr4 (14-117)||(11119274-11119377)
chr4 (52-117)||(11119456-11119521)
chr4 (79-113)||(11119411-11119445)
chr4 (79-113)||(11119555-11119589)
[»] chr5 (10 HSPs)
chr5 (174-325)||(42130147-42130298)
chr5 (206-327)||(42118372-42118499)
chr5 (175-306)||(42124914-42125045)
chr5 (53-117)||(42118314-42118378)
chr5 (14-117)||(42124704-42124807)
chr5 (14-117)||(34231601-34231704)
chr5 (115-323)||(34231346-34231554)
chr5 (13-83)||(41712465-41712534)
chr5 (18-113)||(34239357-34239452)
chr5 (187-312)||(41570559-41570684)
[»] chr3 (1 HSPs)
chr3 (180-323)||(8524377-8524520)
[»] chr6 (2 HSPs)
chr6 (140-319)||(25521564-25521746)
chr6 (14-117)||(25521818-25521921)
[»] chr2 (2 HSPs)
chr2 (14-113)||(12249678-12249777)
chr2 (217-327)||(12249786-12249896)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 115 - 327
Target Start/End: Original strand, 11119640 - 11119852
Alignment:
Q  115 tgaaatttgtttgacaggttaaaaacatttggaatttgactactgagttcattctgatcaagatacaagaaagttagatgtggaagtgttaaaagtgagg 214  Q
    ||||||||||||||||  | |||  ||||||||||| ||| ||||||||  || | | | |||| ||||||||||||| |||||||||||||||||||||    
T  11119640 tgaaatttgtttgacatctgaaatgcatttggaattcgaccactgagttggttgtaaccgagatccaagaaagttagacgtggaagtgttaaaagtgagg 11119739  T
Q  215 gtgggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgaggttagaaaaagaaataggaatttccccttggaattgacaacc 314  Q
     ||||||||||||||||| | ||||| |||||||| |||  ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |    
T  11119740 atgggattgaaccgtttaggcggttacttgagagaattaaagaggtaagatgtgcgaggttagaaaaagaaataggaattttcccttggaattgacaaac 11119839  T
Q  315 tgacagatctaag 327  Q
    |||||||||||||    
T  11119840 tgacagatctaag 11119852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 11119274 - 11119377
Alignment:
Q  14 agttcttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    |||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  11119274 agttcttgcagttttgtcatcccaccaaacacatctggtattggaccgctaaatgcattggaagaaatatccaagtgaataagttgttgaaggtttgaaa 11119373  T
Q  114 gtga 117  Q
    ||||    
T  11119374 gtga 11119377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 11119456 - 11119521
Alignment:
Q  52 tatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaagtga 117  Q
    ||||||||| |||||||| || ||   ||||||||||||||||||||||||||| |||||||||||    
T  11119456 tatttgaccactaaatgaattcgatccaagatccaagtgaataagttgttgaagatttgaaagtga 11119521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 11119411 - 11119445
Alignment:
Q  79 aagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    ||||||||||||||| |||||||||||||||||||    
T  11119411 aagatccaagtgaatgagttgttgaaggtttgaaa 11119445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 11119555 - 11119589
Alignment:
Q  79 aagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    ||||||||||||||| |||||||||||||||||||    
T  11119555 aagatccaagtgaatgagttgttgaaggtttgaaa 11119589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 325
Target Start/End: Original strand, 42130147 - 42130298
Alignment:
Q  174 aagatacaagaaagttagatgtggaagtgttaaaagtgagggtgggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgagg 273  Q
    ||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||    
T  42130147 aagatgcaagaaagttagacgtggaagtgttaaaagtgatgatgggattgaaccgtttaggttgttattcgagagagttagagaggtaagatgtgtgagg 42130246  T
Q  274 ttagaaaaagaaataggaatttccccttggaattgacaacctgacagatcta 325  Q
    ||||||||| | |||||||||||||||| ||||  ||| ||||||| |||||    
T  42130247 ttagaaaaatacataggaatttccccttcgaatgcacatcctgacaaatcta 42130298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 42118372 - 42118499
Alignment:
Q  206 aaagtgagggtgggattgaaccgtttaagtggttatttgagagagttagggag------gtaagatgtgtgaggttagaaaaagaaataggaatttcccc 299  Q
    ||||||||| |||||||||||| |||| || |||||||||||||| ||| ||       ||||||| ||||| ||||| ||||||||||||||||| |||    
T  42118372 aaagtgaggatgggattgaaccatttaggttgttatttgagagagatagagatagagatgtaagatatgtgaagttagtaaaagaaataggaattttccc 42118471  T
Q  300 ttggaattgacaacctgacagatctaag 327  Q
    ||||||||||||||||||||||||||||    
T  42118472 ttggaattgacaacctgacagatctaag 42118499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 42124914 - 42125045
Alignment:
Q  175 agatacaagaaagttagatgtggaagtgttaaaagtgagggtgggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgaggt 274  Q
    |||| |||||||||||||  ||||||| |||||||||||| |||||||||||| ||||  ||||| | ||| |||||||| | ||| | |||||||||||    
T  42124914 agatccaagaaagttagagttggaagttttaaaagtgaggatgggattgaaccatttagatggttttctgacagagttagagtggtgaaatgtgtgaggt 42125013  T
Q  275 tagaaaaagaaataggaatttccccttggaat 306  Q
    |||||||||| | |||||||||||||| ||||    
T  42125014 tagaaaaagacaaaggaatttcccctttgaat 42125045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 42118314 - 42118378
Alignment:
Q  53 atttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaagtga 117  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  42118314 atttgaccactaaatgaattggaagaaagatccaagtgaatgagttgttgaaggtttgaaagtga 42118378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 42124704 - 42124807
Alignment:
Q  14 agttcttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    |||||||||||||| ||||||| ||||||||||||||  |||||||| |||||||| ||  |   ||||||||||||||| |||||| ||||||||||||    
T  42124704 agttcttgcagtttggtcatcccaccaaacacatctgggatttgaccactaaatgaattccacccaagatccaagtgaatgagttgtcgaaggtttgaaa 42124803  T
Q  114 gtga 117  Q
    ||||    
T  42124804 gtga 42124807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 34231704 - 34231601
Alignment:
Q  14 agttcttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    |||||||||||||| |||||||  ||||| |||||||  ||||||||||| ||||| ||| | ||||||||||||| ||| || ||| ||||||||||||    
T  34231704 agttcttgcagtttggtcatcccgccaaatacatctggaatttgaccgcttaatgaattgtatgaaagatccaagttaatgagatgtcgaaggtttgaaa 34231605  T
Q  114 gtga 117  Q
    ||||    
T  34231604 gtga 34231601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 323
Target Start/End: Complemental strand, 34231554 - 34231346
Alignment:
Q  115 tgaaatttgtttgacaggttaaaaacatttggaatttgactactgagttcattctgatcaagatacaagaaagttagatgtggaagtgttaaaagtgagg 214  Q
    ||||||||||||||||| | ||||  ||  || ||||||| | ||||| |||| | ||| |||||||  || || ||||||| ||  ||||||| || ||    
T  34231554 tgaaatttgtttgacagatgaaaagaatccgggatttgaccattgagtacattgtcatcgagatacagaaaggtaagatgtgaaaaggttaaaattgtgg 34231455  T
Q  215 gtgggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgaggttagaaaaagaaataggaatttccccttggaattgacaacc 314  Q
     ||| ||||||||||||| ||||||   ||| |||  |||||||| |||| |||| |||||||||||||| | |||||||  ||||||||||  ||||||    
T  34231454 atggaattgaaccgtttaggtggttccctgacagacgtagggaggcaagacgtgtaaggttagaaaaagacagaggaattgacccttggaatccacaacc 34231355  T
Q  315 tgacagatc 323  Q
    ||| |||||    
T  34231354 tgagagatc 34231346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 41712534 - 41712465
Alignment:
Q  13 cagttcttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagat 83  Q
    ||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||| ||| | |||||||    
T  41712534 cagttcttgca-tttggtcatcccaccaaacacatctggtatttgaccgctaaatgaattgaatgaaagat 41712465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 34239452 - 34239357
Alignment:
Q  18 cttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    |||||||||| ||||||| |||||| |||||||  ||||||||||||| ||| |||   ||||||| |||||| || || | ||||||||||||||    
T  34239452 cttgcagtttggtcatcctaccaaatacatctgggatttgaccgctaagtgaattgcctgaaagatacaagtggatgagattttgaaggtttgaaa 34239357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 41570684 - 41570559
Alignment:
Q  187 gttagatgtggaagtgttaaaagtgagggtgggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgaggttagaaaaagaaa 286  Q
    ||||||| ||||||  |||||||  ||| |||||||||||| || | || ||| | |  |||| ||||||| |||| || |||||||||||| |||||||    
T  41570684 gttagatttggaaggattaaaagaaaggatgggattgaaccattaaggttgttctctatgagacttagggaagtaaaatatgtgaggttagagaaagaaa 41570585  T
Q  287 taggaatttccccttggaattgacaa 312  Q
     |||||||  ||||| |||| |||||    
T  41570584 gaggaattggccctttgaatagacaa 41570559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 8524377 - 8524520
Alignment:
Q  180 caagaaagttagatgtggaagtgttaaaagtgagggtgggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgaggttagaa 279  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||| |||| || ||||| |||||| ||||  |||||||| ||||| |||||||||    
T  8524377 caagtaagttagacgtggaagtgttaaaagtgaggatgggattgaaccatttaggtagttatatgagagtgttaaagaggtaaggtgtgttaggttagaa 8524476  T
Q  280 aaagaaataggaatttccccttggaattgacaacctgacagatc 323  Q
    ||||| || ||||||||||| ||||||||||||  |||||||||    
T  8524477 aaagacattggaatttccccatggaattgacaatttgacagatc 8524520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 140 - 319
Target Start/End: Complemental strand, 25521746 - 25521564
Alignment:
Q  140 catttggaatttgactactgagttcattctgatcaagatacaagaaagttagatgtggaagtgttaaaagtgagggtgggattgaaccgtttaagtggtt 239  Q
    ||||||||||| ||| | ||||||  |||  || |||||  ||| |||||||| |||||||| ||| |||||| | ||||||||| ||||||| || |||    
T  25521746 catttggaattcgaccattgagtttgttcgtataaagatctaagtaagttagacgtggaagttttataagtgatgatgggattgacccgtttaggtagtt 25521647  T
Q  240 atttgagagagttagggaggtaagatgtgtgaggttagaaaaaga---aataggaatttccccttggaattgacaacctgaca 319  Q
    || |||||||||||| |||||||||| ||| ||||||||||||||   | ||||||||||||||| ||||  |||| ||||||    
T  25521646 atatgagagagttagagaggtaagatatgtaaggttagaaaaagacatagtaggaatttccccttcgaatccacaagctgaca 25521564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 25521921 - 25521818
Alignment:
Q  14 agttcttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    |||||||||| ||| ||||||| ||| ||||| ||||  |||||||| |||||||| ||| | |||||||||||| |||| || ||||||||||||||||    
T  25521921 agttcttgcaatttggtcatcccaccgaacacgtctgggatttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaa 25521822  T
Q  114 gtga 117  Q
    ||||    
T  25521821 gtga 25521818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 12249678 - 12249777
Alignment:
Q  14 agttcttgcagtttagtcatccgaccaaacacatctgatatttgaccgctaaatgagttggaagaaagatccaagtgaataagttgttgaaggtttgaaa 113  Q
    |||||||||||||| ||||||  || ||||||||||| |||||||||||||||||| ||| | |||||||||| |||||| ||  |||||||||||||||    
T  12249678 agttcttgcagtttggtcatcgcactaaacacatctggtatttgaccgctaaatgaattgaatgaaagatccacgtgaatgagacgttgaaggtttgaaa 12249777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 12249786 - 12249896
Alignment:
Q  217 gggattgaaccgtttaagtggttatttgagagagttagggaggtaagatgtgtgaggttagaaaaagaaataggaatttccccttggaattgacaacctg 316  Q
    ||||||||||| || |  ||||| | ||||||| ||| |||  |||||||||||| ||||||||| || | |||||||  ||||||||||  |||| |||    
T  12249786 gggattgaaccattaagttggttttctgagagacttatggaattaagatgtgtgaagttagaaaaggacagaggaattggcccttggaatccacaatctg 12249885  T
Q  317 acagatctaag 327  Q
    | |||||||||    
T  12249886 agagatctaag 12249896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University