View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_low_11 (Length: 333)
Name: NF16355_low_11
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31244129 - 31244439
Alignment:
| Q |
1 |
ttctcataatggaaacatgggtgaaaatatagccttcacacccaaatctaac------------attagaaaattttctctttaagcatattcttttcat |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
31244129 |
ttctcataatggaaacatgggtgaaaatatagccttcacacccaaatcgaacgtaaaatcttacattagaaaattttctctttaagcatattcttttcat |
31244228 |
T |
|
| Q |
89 |
atatattacaaaaatggttcatgcatgcacaaccaaatttcccaacacctgcgacacagtcccatgcaaaattatggttaattcaattgagtatatgatt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31244229 |
atatattacaaaaatggttcatgcatgcacaaccaaatttcccaacacctgcgacacagtcccatgcaaaattatggttaattcaattaagtatatgatt |
31244328 |
T |
|
| Q |
189 |
aattcatatcacgttgaaaattgtgaaaatgtggttaatcatgtaactagattaaccgtcattttgactgtcaattgaactaatcatctactcgacaaaa |
288 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||| |||||| || |||||||||| |||||| |
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| T |
31244329 |
aattcaaatcacgttgaaaattgtgaaaatgtggttaatcatgtcattagattaaccataattttgactgtgaattgacctcctcatctactcaacaaaa |
31244428 |
T |
|
| Q |
289 |
ttaaccatatt |
299 |
Q |
| |
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||||| ||||| |
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| T |
31244429 |
ttaactatatt |
31244439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 31849054 - 31849129
Alignment:
| Q |
151 |
catgcaaaattatggttaattcaattgagtatatgattaattcatatcacgttgaaaattgtgaaaatgtggttaa |
226 |
Q |
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| T |
31849054 |
catgtaaaattatggttagtttagttgaatagatagttaattcagatcacgttgaaaattgtgaaattatggttaa |
31849129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 20727141 - 20727223
Alignment:
| Q |
151 |
catgcaaaattatggttaattcaattgagtatatgattaattcatatcacgttgaaaattgtgaaaatgtggttaatcatgta |
233 |
Q |
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| T |
20727141 |
catgcaaaattgtggttaattcacttgagtatatggttaatttagatcacgttgaaaattgtgaaattatagttcatcatgta |
20727223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 38504365 - 38504305
Alignment:
| Q |
151 |
catgcaaaattatggttaattcaattgagtatatgattaattcatatcacgttgaaaattg |
211 |
Q |
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| T |
38504365 |
catgcaaaattatggttaattcagttgaatatatgattagtttagatcacgttgaaaattg |
38504305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 39677574 - 39677512
Alignment:
| Q |
151 |
catgcaaaattatggttaattcaattgagtatatgattaattcatatcacgttgaaaattgtg |
213 |
Q |
| |
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|||||| |||| ||||||| ||| ||||||||||| |||| | | |||||||||||||||||| |
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| T |
39677574 |
catgcataattgtggttaactcagttgagtatatggttaacttagatcacgttgaaaattgtg |
39677512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 44449152 - 44449092
Alignment:
| Q |
151 |
catgcaaaattatggttaattcaattgagtatatgattaattcatatcacgttgaaaattg |
211 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||| ||| || ||||| ||||| ||||| |
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| T |
44449152 |
catgcaaaattatgattaatttaattgagtatatggttagtttttatcatgttgagaattg |
44449092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 26962437 - 26962382
Alignment:
| Q |
161 |
tatggttaattcaattgagtatatgattaattcatatcacgttgaaaattgtgaaa |
216 |
Q |
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||||||||||||||||||| || || |||||| | ||||||||||||||| ||||| |
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| T |
26962437 |
tatggttaattcaattgagaatgtgtttaatttagatcacgttgaaaattatgaaa |
26962382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 29504685 - 29504750
Alignment:
| Q |
151 |
catgcaaaattatggttaattcaattgagtatatgattaattcatatcacgttgaaaattgtgaaa |
216 |
Q |
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|||| |||||||||||||| ||| || ||||||||||| ||| | || || ||||||||||||||| |
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| T |
29504685 |
catgtaaaattatggttaaatcagtttagtatatgattcatttagatgaccttgaaaattgtgaaa |
29504750 |
T |
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