View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_low_16 (Length: 260)
Name: NF16355_low_16
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4953777 - 4954028
Alignment:
| Q |
1 |
aattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatat |
100 |
Q |
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| T |
4953777 |
aattaaactaccagataacataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaatacaactcgaaatat |
4953876 |
T |
|
| Q |
101 |
gagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtttaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
4953877 |
gagctgtcagatctttatggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttggggagtttga |
4953976 |
T |
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| Q |
201 |
gatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953977 |
gatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4954028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4938068 - 4938319
Alignment:
| Q |
1 |
aattaaactaccatataacataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938068 |
aattaaactaccagataacataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatat |
4938167 |
T |
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| Q |
101 |
gagccatcagatctttatggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtttaa |
200 |
Q |
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||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | |
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| T |
4938168 |
gagccgtcggatctttatggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggtttggggagtttga |
4938267 |
T |
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| Q |
201 |
gatgatctggggtgacaggttttcgcaattcattggagggtagttgatgatg |
252 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938268 |
gatgatatggggtgacaggttttcgcaattcattggagggtagttgatgatg |
4938319 |
T |
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