View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16355_low_17 (Length: 254)

Name: NF16355_low_17
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16355_low_17
NF16355_low_17
[»] chr7 (30 HSPs)
chr7 (1-237)||(47045314-47045537)
chr7 (1-70)||(34947545-34947615)
chr7 (1-71)||(7463258-7463329)
chr7 (1-70)||(22738746-22738816)
chr7 (1-69)||(24516304-24516373)
chr7 (1-69)||(34100562-34100631)
chr7 (1-71)||(26974071-26974145)
chr7 (1-71)||(11373441-11373512)
chr7 (5-71)||(32346065-32346132)
chr7 (1-69)||(28103778-28103847)
chr7 (1-69)||(42935706-42935775)
chr7 (1-69)||(46478308-46478377)
chr7 (3-70)||(32018726-32018794)
chr7 (1-71)||(83430-83501)
chr7 (1-71)||(759104-759175)
chr7 (5-71)||(2850894-2850961)
chr7 (1-71)||(41506078-41506149)
chr7 (1-70)||(8592454-8592524)
chr7 (5-70)||(30866016-30866082)
chr7 (1-70)||(39005466-39005536)
chr7 (2-55)||(39452390-39452444)
chr7 (1-70)||(43873968-43874038)
chr7 (1-69)||(7457436-7457505)
chr7 (5-69)||(16904428-16904493)
chr7 (1-69)||(21759999-21760068)
chr7 (1-69)||(27921033-27921102)
chr7 (3-71)||(33819261-33819330)
chr7 (1-69)||(38391793-38391862)
chr7 (1-71)||(2459516-2459585)
chr7 (4-71)||(29835427-29835495)
[»] chr3 (23 HSPs)
chr3 (1-71)||(30190666-30190737)
chr3 (1-71)||(37311988-37312059)
chr3 (1-71)||(37695672-37695743)
chr3 (1-71)||(43253869-43253940)
chr3 (1-69)||(24569108-24569177)
chr3 (1-69)||(49830167-49830236)
chr3 (1-69)||(51837967-51838036)
chr3 (2-71)||(12736578-12736648)
chr3 (5-71)||(8679060-8679127)
chr3 (1-71)||(19823049-19823120)
chr3 (1-71)||(23004388-23004459)
chr3 (5-71)||(37772970-37773037)
chr3 (1-71)||(38795382-38795453)
chr3 (1-70)||(28690789-28690859)
chr3 (1-70)||(34750534-34750604)
chr3 (2-55)||(44301601-44301655)
chr3 (5-69)||(10366650-10366715)
chr3 (1-69)||(36476622-36476691)
chr3 (5-69)||(5322945-5323010)
chr3 (1-69)||(11632119-11632188)
chr3 (1-69)||(11905860-11905929)
chr3 (3-70)||(14194595-14194663)
chr3 (3-66)||(19611949-19612012)
[»] chr5 (21 HSPs)
chr5 (1-76)||(27580638-27580714)
chr5 (1-69)||(7827932-7828001)
chr5 (2-70)||(32440180-32440249)
chr5 (1-69)||(40530230-40530299)
chr5 (1-71)||(1248608-1248679)
chr5 (1-71)||(4818589-4818660)
chr5 (1-71)||(6315781-6315852)
chr5 (1-70)||(8725014-8725084)
chr5 (1-70)||(31655091-31655161)
chr5 (1-69)||(6753665-6753733)
chr5 (1-69)||(37184085-37184154)
chr5 (1-68)||(9515784-9515852)
chr5 (1-71)||(27542833-27542904)
chr5 (1-71)||(40899956-40900027)
chr5 (1-70)||(8698347-8698417)
chr5 (2-71)||(15439323-15439393)
chr5 (1-71)||(21060668-21060739)
chr5 (1-69)||(38508193-38508262)
chr5 (1-69)||(29374380-29374449)
chr5 (1-61)||(29856085-29856146)
chr5 (1-42)||(41062194-41062235)
[»] chr4 (31 HSPs)
chr4 (1-71)||(36985824-36985895)
chr4 (1-69)||(2653458-2653527)
chr4 (4-71)||(28500903-28500971)
chr4 (1-71)||(5841439-5841510)
chr4 (1-71)||(7061676-7061747)
chr4 (1-71)||(11907611-11907682)
chr4 (1-71)||(17114478-17114549)
chr4 (1-71)||(38405114-38405185)
chr4 (1-71)||(47464377-47464448)
chr4 (1-71)||(49428354-49428425)
chr4 (5-69)||(42517652-42517717)
chr4 (1-69)||(49175948-49176017)
chr4 (5-68)||(16821346-16821410)
chr4 (1-71)||(6643672-6643743)
chr4 (1-71)||(40122866-40122937)
chr4 (1-71)||(47773031-47773102)
chr4 (1-71)||(52859811-52859882)
chr4 (1-70)||(34360693-34360763)
chr4 (1-69)||(33790745-33790814)
chr4 (1-69)||(46396897-46396966)
chr4 (1-70)||(2942658-2942727)
chr4 (1-70)||(42616916-42616986)
chr4 (1-69)||(17237310-17237379)
chr4 (1-69)||(17512353-17512422)
chr4 (1-69)||(20612185-20612254)
chr4 (1-69)||(30192243-30192312)
chr4 (1-69)||(32884839-32884908)
chr4 (1-61)||(50264102-50264163)
chr4 (1-69)||(52247442-52247511)
chr4 (2-69)||(461997-462065)
chr4 (2-69)||(27880256-27880323)
[»] chr8 (21 HSPs)
chr8 (1-71)||(1875599-1875670)
chr8 (1-71)||(44761501-44761572)
chr8 (5-71)||(7703163-7703230)
chr8 (1-71)||(40996372-40996443)
chr8 (1-66)||(42887038-42887104)
chr8 (1-71)||(396618-396689)
chr8 (1-71)||(11976943-11977014)
chr8 (1-71)||(21216108-21216179)
chr8 (1-70)||(41092032-41092102)
chr8 (1-69)||(32476325-32476394)
chr8 (5-69)||(42972517-42972582)
chr8 (1-69)||(51151-51219)
chr8 (5-71)||(39405804-39405871)
chr8 (1-70)||(7172952-7173022)
chr8 (1-54)||(10179971-10180025)
chr8 (1-69)||(4428360-4428429)
chr8 (2-70)||(39300949-39301018)
chr8 (5-69)||(39482657-39482722)
chr8 (28-71)||(34948694-34948738)
chr8 (31-70)||(40109802-40109842)
chr8 (2-69)||(44648541-44648609)
[»] chr6 (12 HSPs)
chr6 (1-71)||(24983454-24983525)
chr6 (1-71)||(13909462-13909533)
chr6 (1-69)||(15058155-15058224)
chr6 (2-76)||(32440645-32440720)
chr6 (1-69)||(1063610-1063679)
chr6 (1-69)||(1781840-1781909)
chr6 (1-65)||(1955990-1956055)
chr6 (1-69)||(11655953-11656022)
chr6 (1-69)||(23142705-23142774)
chr6 (5-66)||(13087572-13087634)
chr6 (1-69)||(29363344-29363413)
chr6 (1-69)||(31894217-31894286)
[»] chr1 (29 HSPs)
chr1 (1-71)||(31042835-31042906)
chr1 (1-71)||(36701959-36702030)
chr1 (1-71)||(36718063-36718134)
chr1 (1-71)||(39864149-39864220)
chr1 (2-71)||(28749030-28749100)
chr1 (1-69)||(6160470-6160539)
chr1 (1-69)||(917062-917131)
chr1 (1-69)||(26093432-26093501)
chr1 (1-69)||(49223997-49224066)
chr1 (1-71)||(12039120-12039191)
chr1 (1-71)||(34031536-34031607)
chr1 (1-71)||(41121834-41121905)
chr1 (1-69)||(7759253-7759322)
chr1 (1-69)||(15699160-15699229)
chr1 (1-69)||(40144858-40144927)
chr1 (1-72)||(6023657-6023729)
chr1 (1-72)||(24880914-24880986)
chr1 (1-71)||(9307665-9307736)
chr1 (1-71)||(22181374-22181445)
chr1 (3-69)||(32970578-32970645)
chr1 (1-71)||(37276499-37276570)
chr1 (1-69)||(8896343-8896412)
chr1 (1-69)||(16395058-16395126)
chr1 (1-66)||(17988572-17988640)
chr1 (1-69)||(20209851-20209920)
chr1 (5-69)||(23169004-23169069)
chr1 (1-69)||(31154166-31154235)
chr1 (1-69)||(42410032-42410101)
chr1 (1-64)||(14757610-14757674)
[»] chr2 (18 HSPs)
chr2 (1-70)||(16805919-16805989)
chr2 (1-70)||(16845200-16845270)
chr2 (1-71)||(16463727-16463798)
chr2 (1-71)||(45235619-45235690)
chr2 (4-69)||(39691531-39691597)
chr2 (1-69)||(37322466-37322535)
chr2 (1-71)||(14523376-14523447)
chr2 (1-71)||(43410464-43410535)
chr2 (1-70)||(16377661-16377731)
chr2 (1-70)||(43115807-43115877)
chr2 (1-69)||(1206709-1206778)
chr2 (15-71)||(19937729-19937786)
chr2 (1-71)||(5789652-5789723)
chr2 (5-71)||(8947056-8947123)
chr2 (1-67)||(15359095-15359162)
chr2 (1-71)||(25637519-25637590)
chr2 (5-69)||(43699605-43699670)
chr2 (32-71)||(35313956-35313996)
[»] scaffold0182 (1 HSPs)
scaffold0182 (4-69)||(20361-20427)
[»] scaffold0583 (1 HSPs)
scaffold0583 (1-71)||(2063-2134)
[»] scaffold0302 (1 HSPs)
scaffold0302 (1-71)||(16136-16207)
[»] scaffold0159 (1 HSPs)
scaffold0159 (1-71)||(34025-34096)
[»] scaffold0095 (1 HSPs)
scaffold0095 (5-71)||(50246-50313)
[»] scaffold0330 (1 HSPs)
scaffold0330 (5-69)||(5432-5497)
[»] scaffold0294 (1 HSPs)
scaffold0294 (5-69)||(17077-17142)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-69)||(105722-105791)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47045537 - 47045314
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttacattgaaatcaactcaattaatcatttccgaaatccttaacacaaacatttaaagact 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||             |||| || | ||    
T  47045537 ctacaattaataagggtattttaggaaatgatactaattttacattgaaatcaactcaattaatcatttccgaaa-------------cattaaacggct 47045451  T
Q  101 aattttgagaaggatttacatacttgaagtactaaataggagagagtgtgatactttagaagtaaataaattgattgatggtttgaatcacaatgaaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47045450 aattttgagaaggatttacatacttgaagtactaaataggagagagtgtgatactttagaagtaaataaattgattgatggtttgaatcacaatgaaaac 47045351  T
Q  201 caatcttaagatttagaatacattaataccaatttat 237  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47045350 caatcttgagatttagaatacattaataccaatttat 47045314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34947545 - 34947615
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||||| |||||| | |||||| |||||||| ||||||||||||| ||||||||||||||    
T  34947545 ctacaattaataagggtgttttagtaaatgataataattttaccattgaaatcaacacaattaatcatttc 34947615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7463258 - 7463329
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||| ||||||||| || | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  7463258 ctacaattaatgagggtatttaagtaaatgctactaattttatcattgaaatcaacacaattaatcatttcc 7463329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22738746 - 22738816
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||| ||| |||||||| | ||||||||||||||| |||||||||| || ||||||||||||||    
T  22738746 ctacaattaatgaggatattttagtaaatgatactaattttaccattgaaatctacacaattaatcatttc 22738816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24516373 - 24516304
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| | |||||| | ||| |||||||||||| |||||||||||| |||||||||||||    
T  24516373 ctacaattaataaggtttttttagtaaatgttactaattttaccattgaaatcaacacaattaatcattt 24516304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34100631 - 34100562
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| | |||||||| | ||| |||||||||||| |||||||||||| |||||||||||||    
T  34100631 ctacaattaataaagatattttagtaaatgctactaattttactattgaaatcaacacaattaatcattt 34100562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26974071 - 26974145
Alignment:
Q  1 ctacaattaataagggtattttagga---gatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| ||||||||| |   ||||||| ||||||||| |||||||||||| |||||||||||||||    
T  26974071 ctacaattaataagagtattttagtaaatgatgatattaattttaccattgaaatcaacacaattaatcatttcc 26974145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11373512 - 11373441
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| ||| ||||||||| ||||||| |||||||    
T  11373512 ctacaattaataagggtgttttagtaaatgctactaattttaccatcgaaatcaacacaattaaacatttcc 11373441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 32346132 - 32346065
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||| ||||||||| |||||||| ||||||||| |||||||||||| |||| ||| ||||||    
T  32346132 aattaataagagtattttagtagatgatattaattttaccattgaaatcaacacaatcaattatttcc 32346065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28103778 - 28103847
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||| | | ||| | |||||||||| |||||||||||| |||||||||||||    
T  28103778 ctacaattaataagggtgttttggtaaatgctgctaattttaccattgaaatcaacacaattaatcattt 28103847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 42935706 - 42935775
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | |||||| |||||||| |||  |||||||| |||||||||||||    
T  42935706 ctacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatcattt 42935775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46478377 - 46478308
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||| | ||| |||||| ||||| ||| |||| ||| |||||||||||||    
T  46478377 ctacaattaataagggtattttagtaaatgctactaactttactattaaaattaacacaattaatcattt 46478308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 32018794 - 32018726
Alignment:
Q  3 acaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    |||||||||||| ||||||||| | ||||||  |||||||| |||||||||||| |||||| |||||||    
T  32018794 acaattaataagagtattttagtaaatgatagaaattttactattgaaatcaacacaattattcatttc 32018726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 83430 - 83501
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||  | |||||| | ||||||||||||||| |||  |||||||| |||||||||||||||    
T  83430 ctacaattaataagaatgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttcc 83501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 759175 - 759104
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| | |||||| | ||||||||| ||||| |||  |||||||| |||||||||||||||    
T  759175 ctacaattaataaggatgttttagtaaatgatactagttttaccatcaaaatcaacacaattaatcatttcc 759104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 2850961 - 2850894
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||| |||||||||||| | || ||| |||||||| |||||||||||||  ||||||||||||||    
T  2850961 aattaatgagggtattttagtaaataatattaattttatcattgaaatcaacataattaatcatttcc 2850894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41506149 - 41506078
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| || |||||| | ||| ||||||||||| |||| |||| ||| |||||||||||||||    
T  41506149 ctacaattaataagagtgttttagtaaatgctactaattttaccattaaaattaacacaattaatcatttcc 41506078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8592524 - 8592454
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||||| |||||  | ||  ||||||||| || |||||||||||| ||||||||||||||    
T  8592524 ctacaattaataagggtgttttattaaatactactaatttaaccattgaaatcaacacaattaatcatttc 8592454  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 30866016 - 30866082
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    |||||||||| ||||||||| | |||||| ||||| ||| |||||||| ||| ||||||||||||||    
T  30866016 aattaataagagtattttagtaaatgatattaattataccattgaaattaacacaattaatcatttc 30866082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39005466 - 39005536
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||| ||| |||||||||| | ||||||||||||||| ||||  ||||||||||| |||| |||||    
T  39005466 ctacaattattaaaggtattttagtaaatgatactaattttaccattttaatcaactcaactaataatttc 39005536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 39452390 - 39452444
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaac 55  Q
    ||||||||||||||||||||||| | |||||| |||||||| |||| ||||||||    
T  39452390 tacaattaataagggtattttagtaaatgatattaattttaccattaaaatcaac 39452444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43873968 - 43874038
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||| ||||||||||| |||||| | |||||| |||||||| |||  |||||||| ||||||||||||||    
T  43873968 ctacatttaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatcatttc 43874038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7457505 - 7457436
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||| ||||||||||| |||||| | |||  ||||||||||| ||||||||||||  ||||||||||||    
T  7457505 ctacatttaataagggtcttttagtaaatgtaactaattttaccattgaaatcaacataattaatcattt 7457436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 16904428 - 16904493
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||| | ||||||||| |  ||||| ||||||||| |||||||||||| |||||||||||||    
T  16904428 aattaatacgagtattttagaaagtgataataattttactattgaaatcaacacaattaatcattt 16904493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21760068 - 21759999
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||| ||||||| |||||  | ||||||||||||||| |||  |||||||| |||||||||||||    
T  21760068 ctacaattagtaagggtgttttattaaatgatactaattttaccatcaaaatcaacacaattaatcattt 21759999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27921033 - 27921102
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| || |||||  | ||||||||||||||| |||| ||||||||  ||||||||||||    
T  27921033 ctacaattaataagagtgttttaataaatgatactaattttaccattaaaatcaacataattaatcattt 27921102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 33819261 - 33819330
Alignment:
Q  3 acaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||| ||  ||| | | ||| |||||||||||| |||||||||||| |||||||||||||||    
T  33819261 acaattaataagagtgattttgtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 33819330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38391793 - 38391862
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||| ||| || |||||| | ||||||||||||||| |||  |||||||| |||||||||||||    
T  38391793 ctacaattaacaagagtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcattt 38391862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2459516 - 2459585
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttaca-ttgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| || ||| | ||||  ||||||||||  ||||||||||| |||||||||||||||    
T  2459516 ctacaattaataagggtgttgtagtaaatga--ctaattttaccgttgaaatcaacacaattaatcatttcc 2459585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 29835495 - 29835427
Alignment:
Q  4 caattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||| || |||||| | ||| ||||||||||| |||| ||||||||  ||||||||||||||    
T  29835495 caattaataagagtgttttagtaaatgctactaattttaccatttaaatcaacataattaatcatttcc 29835427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30190737 - 30190666
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||    
T  30190737 ctacaattaataagggtattttagtaaatgatactaattttaccattgaaatcaacacaattaatcatttcc 30190666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37311988 - 37312059
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  37311988 ctacaattaataagggttttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 37312059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37695743 - 37695672
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||||| |||||||| ||||||||||||| |||||||||||||||    
T  37695743 ctacaattaataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttcc 37695672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43253940 - 43253869
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  43253940 ctacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 43253869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24569177 - 24569108
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||| | || ||| |||||||| ||||||||||||| |||||||||||||    
T  24569177 ctacaattaataagggtattttagtaaataatattaattttaccattgaaatcaacacaattaatcattt 24569108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49830167 - 49830236
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| |||||||||| | |||||| ||||||||| |||||||||||| |||||||||||||    
T  49830167 ctacaattaataatggtattttagtaaatgatattaattttactattgaaatcaacacaattaatcattt 49830236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 51838036 - 51837967
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||| ||||||||||||||||| | |||||| |||||||| ||||||||||||| |||||||||||||    
T  51838036 ctacaactaataagggtattttagtaaatgatattaattttatcattgaaatcaacacaattaatcattt 51837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 12736648 - 12736578
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||||  ||||||| |||||||||||||||    
T  12736648 tacaattaataagggtattgtagtaaatgatactaattttatcattagaatcaacacaattaatcatttcc 12736578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 8679127 - 8679060
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||| | |||||| | ||| |||||||||||| |||||||||||| |||||||||||||||    
T  8679127 aattaataaggatcttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 8679060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19823049 - 19823120
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||||||||||| || |||  |||||||| |||||||||||||||    
T  19823049 ctacaattaataagggtgttttagtaaatgatactaattctaccatcaaaatcaacacaattaatcatttcc 19823120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23004459 - 23004388
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||  ||||||||||| |||||||||| || |||||||||||||||    
T  23004459 ctacaattaataagggtgttttagtatatactactaattttaccattgaaatcgacacaattaatcatttcc 23004388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 37773037 - 37772970
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| ||||||  |||||||||||||||    
T  37773037 aattaataagggtattttagtaaatgatattaattttaccattgtaatcaatacaattaatcatttcc 37772970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38795382 - 38795453
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||| ||||  | | ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  38795382 ctacaattaataagggcatttgggtaaatgatactaattttaccattgaaataaacacaattaatcatttcc 38795453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 28690859 - 28690789
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||| | |||||||| | |||||| |||||||| | ||||||||||| ||||||||||||||    
T  28690859 ctacaattaataaagatattttagtaaatgatattaattttaccgttgaaatcaacacaattaatcatttc 28690789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34750534 - 34750604
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||| | |||||| | ||||||||||||||| |||| |||||||| |||| |||||||||    
T  34750534 ctacaattaataaggatgttttagtaaatgatactaattttaccattaaaatcaacacaatcaatcatttc 34750604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 44301601 - 44301655
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaac 55  Q
    ||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||    
T  44301601 tacaattgataagggtattttagtaaatgatactaattttatcattgaaatcaac 44301655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 10366715 - 10366650
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||| || |||||  | |||||||||||||||| |||||||||||| |||||||||||||    
T  10366715 aattaataagagtgttttaataaatgatactaattttaccattgaaatcaacacaattaatcattt 10366650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36476622 - 36476691
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||| | |||||| |||||||| ||||| ||||||| |||| ||| ||||    
T  36476622 ctacaattaataagggtattttagtaaatgatattaattttaccattgcaatcaacacaatcaattattt 36476691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 5323010 - 5322945
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||| ||||||||| | |||||| |||||||| || ||||||||||  ||||||||||||    
T  5323010 aattaataagtgtattttagtaaatgatattaattttatcactgaaatcaacataattaatcattt 5322945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11632119 - 11632188
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttaca-ttgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| ||| |||||| | ||  ||||||||||||  ||||||||||| |||||||||||||    
T  11632119 ctacaattaataaaggtgttttagtaaatactactaattttaccgttgaaatcaacacaattaatcattt 11632188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11905860 - 11905929
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||  ||||| | ||||||||||||||| |||  |||| ||| |||||||||||||    
T  11905860 ctacaattaataagggtgctttagtaaatgatactaattttatcatcaaaattaacacaattaatcattt 11905929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 14194595 - 14194663
Alignment:
Q  3 acaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    |||||| ||||  ||||||||| | ||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  14194595 acaattcataaaagtattttagtaaatggtactaattttatcattgaaatcaacacaattgatcatttc 14194663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 19611949 - 19612012
Alignment:
Q  3 acaattaataagggtattttaggagatgatactaatttt-acattgaaatcaactcaattaatca 66  Q
    ||||||||||||| |||||||| | || ||| ||||||| |||||||||||||| ||||||||||    
T  19611949 acaattaataaggatattttagtaaattata-taattttaacattgaaatcaacacaattaatca 19612012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27580638 - 27580714
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttccgaaat 76  Q
    |||||||||||||||||||||||| | |||||| |||||||| ||||||||||||| ||||||||||||||| ||||    
T  27580638 ctacaattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttcctaaat 27580714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7828001 - 7827932
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||  | ||||||||||||||| ||||||||||||| |||||||| ||||    
T  7828001 ctacaattaataagggtattttaataaatgatactaattttaccattgaaatcaacacaattaattattt 7827932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 32440180 - 32440249
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||||||||||| | |||||| |||||||| ||||||||| ||| ||||||||||||||    
T  32440180 tacaattaataagggtattttagtaaatgatattaattttatcattgaaattaacacaattaatcatttc 32440249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40530299 - 40530230
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||||||    
T  40530299 ctacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcattt 40530230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1248679 - 1248608
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||||||||||||  ||||||| ||||||    
T  1248679 ctacaattaataagggtattttagtaaatgatattaattttaccattgaaatcaacataattaataatttcc 1248608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4818589 - 4818660
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||| |||||||||||| |||||||||||| |||||||| ||||||    
T  4818589 ctacaattaataagggtgttttagtaaatgctactaattttacaattgaaatcaacacaattaattatttcc 4818660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6315852 - 6315781
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | |||||| |||||||| ||||||||| ||| |||| ||||||||||    
T  6315852 ctacaattaataagggtattttagtaaatgatattaattttatcattgaaattaacacaatcaatcatttcc 6315781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8725084 - 8725014
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    |||||||||||||| || |||||| | |||||| ||||||||| |||||||||||| ||||||||||||||    
T  8725084 ctacaattaataagtgtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttc 8725014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31655091 - 31655161
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||| |||| ||| | |||||| ||||||||| |||||||||||| ||||||||||||||    
T  31655091 ctacaattaataaggatattatagtaaatgatattaattttaccattgaaatcaacacaattaatcatttc 31655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6753733 - 6753665
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||| || | ||||||||||||    
T  6753733 ctacaattaataagggtattttagtaaatgatactaattttaccattgaaattaa-taaattaatcattt 6753665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37184154 - 37184085
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||| ||||| | |||||||| | |||||| ||||||||| ||||||||||||||||||||||||||    
T  37184154 ctacaatgaataaagatattttagtaaatgatattaattttaccattgaaatcaactcaattaatcattt 37184085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9515784 - 9515852
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatt 68  Q
    |||| |||||||||| | |||||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  9515784 ctactattaataaggatgttttagtaaatgatactaattttaccattgaaatcaacacaattaatcatt 9515852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27542833 - 27542904
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| ||||||||| | ||| || |||||||| ||||||||||||| |||| ||||||||||    
T  27542833 ctacaattaataagagtattttagtaaatggtattaattttaccattgaaatcaacacaatcaatcatttcc 27542904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 40899956 - 40900027
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttt-acattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||||||||||||||  |||  |||||||| |||||||||||||||    
T  40899956 ctacaattaataagggtgttttagtaaatgatactaattttgccatcaaaatcaacacaattaatcatttcc 40900027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8698347 - 8698417
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||||| |||| | | |||  ||||||||||| |||||||||||| ||||||||||||||    
T  8698347 ctacaattaataagggtgttttggtaaatgcaactaattttaccattgaaatcaacacaattaatcatttc 8698417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 15439393 - 15439323
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||  ||||||||| | ||||||||||||||| ||||||||| ||  |||||||||||||||    
T  15439393 tacaattaataaaagtattttagtaaatgatactaattttaccattgaaattaatacaattaatcatttcc 15439323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21060668 - 21060739
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| ||||||||| | || |||||||||||| |||  |||| ||| |||||||||||||||    
T  21060668 ctacaattaataagagtattttagtaaataatactaattttaccatcaaaataaacacaattaatcatttcc 21060739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38508262 - 38508193
Alignment:
Q  1 ctacaattaataagggtattttag-gagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| ||||||||  ||| ||||||||||||||| |||||||| ||| |||||||||||||    
T  38508262 ctacaattaataagagtattttaatgag-tgatactaattttaccattgaaattaacacaattaatcattt 38508193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29374380 - 29374449
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| ||| |||||| | ||| || |||||||| |||||||||||||  ||||||||||||    
T  29374380 ctacaattaataaaggtcttttagtaaatgctattaattttatcattgaaatcaacataattaatcattt 29374449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29856085 - 29856146
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaatt 61  Q
    |||||||||||||| ||||||||| |  ||||| |||||||| ||||||||||||| |||||    
T  29856085 ctacaattaataagagtattttagcaagtgatattaattttatcattgaaatcaacgcaatt 29856146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41062235 - 41062194
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta 42  Q
    ||||||||||||||||| |||||| | |||||||||||||||    
T  41062235 ctacaattaataagggtgttttagtaaatgatactaatttta 41062194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36985824 - 36985895
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||    
T  36985824 ctacaattaatacgggtattttagtaaatgatactaattttaccattgaaatcaacacaattaatcatttcc 36985895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2653458 - 2653527
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| ||||||||  | |||||||||||||||| |||||||||||| |||||||||||||    
T  2653458 ctacaattaataagagtattttaataaatgatactaattttacaattgaaatcaacacaattaatcattt 2653527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 28500971 - 28500903
Alignment:
Q  4 caattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||||||| | |||||| |||||||| ||||||||||||| |||| ||||||||||    
T  28500971 caattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaatcaatcatttcc 28500903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5841510 - 5841439
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||| |||||||| |||| ||||||||||    
T  5841510 ctacaattaataagggtattttagtaaatgatattaattttaccattaaaatcaacgcaatcaatcatttcc 5841439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7061747 - 7061676
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||| | |||| ||| | |||||||||||||||| |||||||||||| |||||||||||||||    
T  7061747 ctacaattaataaagatattatagtaaatgatactaattttaccattgaaatcaacacaattaatcatttcc 7061676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11907682 - 11907611
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||||||||||||||| |||  |||||||| |||||||||||||||    
T  11907682 ctacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttcc 11907611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17114478 - 17114549
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||||||||||||||| |||  |||||||| |||||||||||||||    
T  17114478 ctacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttcc 17114549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38405185 - 38405114
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||| ||||||||  ||||||||||||||    
T  38405185 ctacaattaataagggtattttagtaaatgatattaattttaccatttaaatcaacagaattaatcatttcc 38405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47464448 - 47464377
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| || |||||| | ||| |||||||||||| |||||||||||| |||||||||||||||    
T  47464448 ctacaattaataagagttttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 47464377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49428425 - 49428354
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | || ||| |||||||| ||||||||||||| ||| |||||||||||    
T  49428425 ctacaattaataagggtattttagtaaattatattaattttaccattgaaatcaacacaaataatcatttcc 49428354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 42517717 - 42517652
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||| | |||||  ||||||||| |||||||||||| |||||||||||||    
T  42517717 aattaataagggtattttagtaaatgatcttaattttaccattgaaatcaacacaattaatcattt 42517652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49176017 - 49175948
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| |||||||| | ||||||||||||||| ||||||||||  | |||||||||||||    
T  49176017 ctacaattaataaggttattttagtaaatgatactaattttatcattgaaatctccacaattaatcattt 49175948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 16821410 - 16821346
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatt 68  Q
    ||||||||||| |||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  16821410 aattaataaggatattatagtaaatgatactaattttatcattgaaatcaacacaattaatcatt 16821346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6643743 - 6643672
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||| | | |||||| | ||| |||||||||||| |||||||||||| |||||||||||||||    
T  6643743 ctacaattaataaagatgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 6643672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40122937 - 40122866
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||| ||||||||| |||||| | ||| ||||||||||| |||| |||||||| |||||||||||||||    
T  40122937 ctacaatcaataagggtgttttagtaaatgctactaattttaacattaaaatcaacgcaattaatcatttcc 40122866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47773102 - 47773031
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||||||||||||||| |||  |||||||| |||||||| ||||||    
T  47773102 ctacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaattatttcc 47773031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 52859882 - 52859811
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| | |||||| | ||||||||||||||| |||  |||||||| |||||||||||||||    
T  52859882 ctacaattaataaggatgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttcc 52859811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34360693 - 34360763
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    |||||||||||||| || |||||| | ||| ||||||||||| ||||||||||||  ||||||||||||||    
T  34360693 ctacaattaataagagtgttttagtaaatgctactaattttaccattgaaatcaatacaattaatcatttc 34360763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33790814 - 33790745
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | |||| |||||||||| |||  |||||||| |||||||||||||    
T  33790814 ctacaattaataagggtgttttagcaaatgaaactaattttaccatcaaaatcaacacaattaatcattt 33790745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46396966 - 46396897
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| || |||||| | ||| || ||||||||| |||||||||||| |||||||||||||    
T  46396966 ctacaattaataagagtgttttagtaaatgctattaattttaccattgaaatcaacacaattaatcattt 46396897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2942727 - 2942658
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||| | |||||| | ||| ||||||||||| ||| ||||||||| ||||||||||||||    
T  2942727 ctacaattaataagg-tgttttagtaaatgctactaattttatcatcgaaatcaacacaattaatcatttc 2942658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42616986 - 42616916
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    |||||||||||||   |||||||| | |||||| ||||||||| |||||||||||| || |||||||||||    
T  42616986 ctacaattaataaaaatattttagtaaatgatattaattttaccattgaaatcaacacagttaatcatttc 42616916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17237379 - 17237310
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| | |||||| | ||| ||||||||||| ||||| ||||||| |||||||| ||||    
T  17237379 ctacaattaataaggttgttttagtaaatgttactaattttaccattgcaatcaacacaattaattattt 17237310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17512422 - 17512353
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| |||||||||| | || ||| |||||||| | || |||||||||||| |||||||||    
T  17512422 ctacaattaataatggtattttagtaaattatattaattttacctttaaaatcaactcaactaatcattt 17512353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20612254 - 20612185
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| ||| |||||| | || ||||||| |||| || |||||||||||||| |||||||||    
T  20612254 ctacaattaataatggtgttttagtaaattatactaactttagcaatgaaatcaactcaactaatcattt 20612185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30192243 - 30192312
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttaca-ttgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||  |||||||| | |||| | |||||||| | ||||||||||| |||||||||||||    
T  30192243 ctacaattaataagaatattttagcaaatgacattaattttataattgaaatcaacacaattaatcattt 30192312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32884839 - 32884908
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| || |||||  | ||| |||||||| ||| |||||||||||| |||||||||||||    
T  32884839 ctacaattaataagagtgttttactaaatgctactaattctaccattgaaatcaacacaattaatcattt 32884908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 50264163 - 50264102
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttt-acattgaaatcaactcaatt 61  Q
    |||||||||||||| ||||||||| | |||||  ||||||| |||||||||||||| |||||    
T  50264163 ctacaattaataagagtattttagtaaatgatgttaattttaacattgaaatcaacacaatt 50264102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 52247511 - 52247442
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| |||||||| | ||  || |||||||| ||||||||| ||| |||||||||||||    
T  52247511 ctacaattaataaggatattttagtaaattgtattaattttaccattgaaattaacacaattaatcattt 52247442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 461997 - 462065
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| |||||||| | || ||| || ||||| ||||||||||||  |||||||||||||    
T  461997 tacaattaataaggatattttagtaaataatattacttttaccattgaaatcaatacaattaatcattt 462065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 27880323 - 27880256
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||| ||||| ||||| ||| | ||||||||||||||| ||||||||||||| ||| |||||||||    
T  27880323 tacaattgataagagtattctagtaaatgatactaattttaccattgaaatcaacacaa-taatcattt 27880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1875670 - 1875599
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  1875670 ctacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 1875599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44761572 - 44761501
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  44761572 ctacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 44761501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 7703230 - 7703163
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||||||||| |||||||| ||||||    
T  7703230 aattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaattaattatttcc 7703163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40996443 - 40996372
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttacatt-gaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||| ||||||||||||||  |||||||| |||||||||||||||    
T  40996443 ctacaattaataagggtgttttagtaaatgaaactaattttacattcaaaatcaacacaattaatcatttcc 40996372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42887038 - 42887104
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatca 66  Q
    ||||||||||||| |||||||||| | |||||||||||||| | |||||||||||| ||||||||||    
T  42887038 ctacaattaataaaggtattttagtaaatgatactaattttgctattgaaatcaacacaattaatca 42887104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 396689 - 396618
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| |||| ||| | ||||||||||||||| | |||||||||||  ||||||||||||||    
T  396689 ctacaattaataaggatattgtagtaaatgatactaattttaccgttgaaatcaacataattaatcatttcc 396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11977014 - 11976943
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | ||| |||| ||| || ||||||||||||| |||||||| ||||||    
T  11977014 ctacaattaataagggtattttagtaaatgctactgattataccattgaaatcaacacaattaatgatttcc 11976943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21216179 - 21216108
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| | |||||| | |||  ||||||||||| |||||||||||| |||||||||||||||    
T  21216179 ctacaattaataaggatgttttagtaaatgcaactaattttaccattgaaatcaacacaattaatcatttcc 21216108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41092032 - 41092102
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    |||||||||||||| ||||||||  | |||||| |||||||| ||||||||||||| ||||||||| ||||    
T  41092032 ctacaattaataagagtattttaataaatgatattaattttaccattgaaatcaacacaattaatcgtttc 41092102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32476325 - 32476394
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||  | |||||| |||||||| |||||||||||||  ||| ||||||||    
T  32476325 ctacaattaataagggtattttaataaatgatattaattttatcattgaaatcaacagaatcaatcattt 32476394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 42972582 - 42972517
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||| | | |||| |||||||| ||||||||||||  |||||||||||||    
T  42972582 aattaataagggtattttagtaaacgatattaattttaccattgaaatcaaaacaattaatcattt 42972517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 51151 - 51219
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttacattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||  || |||| | | |||||||| |||||||||| |||||||| |||||||||||||    
T  51151 ctacaattaataaatgtgtttttgtaaatgatacttattttacattaaaatcaacacaattaatcattt 51219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 39405804 - 39405871
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||| | |||| ||| | ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  39405804 aattaataaagatattatagtaaatgatactaattttatcattgaaattaacacaattaatcatttcc 39405871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7172952 - 7173022
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    |||||||||||||   | |||||| | ||| ||||||||||| ||||||||||||| ||||||||||||||    
T  7172952 ctacaattaataaatatgttttagtaaatgctactaattttatcattgaaatcaacacaattaatcatttc 7173022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10180025 - 10179971
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaa 54  Q
    |||||||||||||| ||||||||| | || |||||||||||| ||||||||||||    
T  10180025 ctacaattaataagtgtattttagtaaattatactaattttaccattgaaatcaa 10179971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4428429 - 4428360
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||  ||||||||| | |||||| |||||||| |||| |||||||| ||| |||||||||    
T  4428429 ctacaattaataattgtattttagtaaatgataataattttatcattaaaatcaacacaaataatcattt 4428360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 39301018 - 39300949
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    |||||||||| ||||| |||||| | |||||| ||||||||| || |||||||||  |||||||||||||    
T  39301018 tacaattaattagggttttttagtaaatgatattaattttaccatcgaaatcaacataattaatcatttc 39300949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 39482657 - 39482722
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttaca-ttgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| |||||| | ||  ||||||||||||  ||||||||||| |||||||||||||    
T  39482657 aattaataagggtgttttagtaaattctactaattttacccttgaaatcaacacaattaatcattt 39482722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 34948738 - 34948694
Alignment:
Q  28 atgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    
T  34948738 atgatactaattttactatttaaatcaacacaattaatcatttcc 34948694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 40109802 - 40109842
Alignment:
Q  31 atactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  40109802 atactaattttactattgaaatcaattcaattaatcatttc 40109842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 44648609 - 44648541
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||| ||||  | |||||| | |||||||||||||||| ||||||||||||| || |||||||||    
T  44648609 tacaattagtaagtatgttttagtaaatgatactaattttaccattgaaatcaactaaactaatcattt 44648541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24983525 - 24983454
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||| |||||||||| ||||||||||||||||| |||||||||||    
T  24983525 ctacaattaataagggtgttttagtaaatgacactaattttaccattgaaatcaactcaactaatcatttcc 24983454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13909462 - 13909533
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | |||  |||||||||| ||||||||||||| || ||||||||||||    
T  13909462 ctacaattaataagggtattttagtaaatgtcactaattttaccattgaaatcaacacatttaatcatttcc 13909533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15058155 - 15058224
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||| | |||  |||||||||| ||||||||| |||| ||||||||||||    
T  15058155 ctacaattaataagggtattttagtaaatgccactaattttaccattgaaattaacttaattaatcattt 15058224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 32440720 - 32440645
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttccgaaat 76  Q
    |||||||||||||||| |||||| | || |||||||||||| |||  |||||||| ||||||||||||||| ||||    
T  32440720 tacaattaataagggtgttttagtaaataatactaattttaccatcaaaatcaacacaattaatcatttcctaaat 32440645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1063679 - 1063610
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||| | || ||||||||| | || |||||||||||| ||||||||||||| |||||||||||||    
T  1063679 ctacaattactcagagtattttagtaaataatactaattttatcattgaaatcaacacaattaatcattt 1063610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1781840 - 1781909
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | ||| ||||||||||| |||||| ||||||  ||||||||||||    
T  1781840 ctacaattaataagggtgttttagtaaatgctactaattttaccattgagatcaacataattaatcattt 1781909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1956055 - 1955990
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatc 65  Q
    |||||||||||||| |||| |||| | ||||||||||||||| ||||||||||||  |||||||||    
T  1956055 ctacaattaataagagtatattagtaaatgatactaattttaccattgaaatcaatacaattaatc 1955990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11656022 - 11655953
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | |||| |||||||||| |||  |||||||| |||||||||||||    
T  11656022 ctacaattaataagggtgttttagtaaatgacactaattttaccatcaaaatcaacacaattaatcattt 11655953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23142705 - 23142774
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | |||  |||| |||||| |||||||||||| |||||||||||||    
T  23142705 ctacaattaataagggtgttttagtaaatgccactatttttaccattgaaatcaacacaattaatcattt 23142774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 13087572 - 13087634
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatca 66  Q
    ||||||||||| | |||||| | |||||| ||||||||| |||||||||||| ||||||||||    
T  13087572 aattaataaggatgttttagtaaatgatattaattttaccattgaaatcaacacaattaatca 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29363344 - 29363413
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| | |||||| | ||||||||| ||||| |||  |||||||| |||||||||||||    
T  29363344 ctacaattaataaggatgttttagtaaatgatactagttttaccatcaaaatcaacacaattaatcattt 29363413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31894286 - 31894217
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| |   |||||| | ||| |||||||||||| |||||||||||| |||||||||||||    
T  31894286 ctacaattaataatgacgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcattt 31894217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31042835 - 31042906
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||||||  || | ||||||||||||||| ||||||||||||| |||||||||||||||    
T  31042835 ctacaattaataagggtattacagtaaatgatactaattttaccattgaaatcaacacaattaatcatttcc 31042906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36701959 - 36702030
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||  ||||||||||||||    
T  36701959 ctacaattaataagggcattttagtaaatgatactaattttaccattgaaatcaacataattaatcatttcc 36702030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36718063 - 36718134
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||  ||||||||||||||    
T  36718063 ctacaattaataagggcattttagtaaatgatactaattttaccattgaaatcaacataattaatcatttcc 36718134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39864149 - 39864220
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| ||||||||| | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  39864149 ctacaattaataagagtattttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 39864220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 28749030 - 28749100
Alignment:
Q  2 tacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||| |||||||||||||||    
T  28749030 tacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatcatttcc 28749100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6160539 - 6160470
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| ||||||||| | || |||||||||||| ||||||||||||| |||||||||||||    
T  6160539 ctacaattaataagagtattttagtaaataatactaattttatcattgaaatcaacacaattaatcattt 6160470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 917062 - 917131
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||| | |||||| |||||||| |||| ||||||||  ||||||||||||    
T  917062 ctacaattaataagggtattttagtaaatgatattaattttaccatttaaatcaacataattaatcattt 917131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26093432 - 26093501
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| |||||||  | |||||| |||||||| ||||||||||||| |||||||||||||    
T  26093432 ctacaattaataaggatattttaataaatgatattaattttaccattgaaatcaacacaattaatcattt 26093501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49224066 - 49223997
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | ||||||||||||||| |||  |||||||| |||||||||||||    
T  49224066 ctacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcattt 49223997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12039120 - 12039191
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| || | |||| | ||| |||||||||||| |||||||||||| |||||||||||||||    
T  12039120 ctacaattaataagagtgtattagtaaatgttactaattttaccattgaaatcaacacaattaatcatttcc 12039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34031607 - 34031536
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||| |||||||||| | |||||| |||||||| ||||| ||||||| ||| |||||||||||    
T  34031607 ctacaattaataacggtattttagtaaatgatattaattttaccattggaatcaacacaagtaatcatttcc 34031536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41121905 - 41121834
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||||||||||||| | || || ||||||||| |||  |||||||| |||||||||||||||    
T  41121905 ctacaattaataagggtattttagtaaattatgctaattttaccatcaaaatcaacacaattaatcatttcc 41121834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7759253 - 7759322
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||| ||||||||| | |||||| |||||| | ||||||||||||| |||||||| ||||    
T  7759253 ctacaattaataagagtattttagtaaatgatattaatttcaccattgaaatcaacacaattaattattt 7759322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15699160 - 15699229
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | |||||| |||||||| |||  |||||||| |||||||||||||    
T  15699160 ctacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatcattt 15699229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40144927 - 40144858
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | |||||| |||||||| |||  |||||||| |||||||||||||    
T  40144927 ctacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatcattt 40144858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6023729 - 6023657
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttccg 72  Q
    ||||||||||||| |||||||||| | | | |||||| ||||| |||||||||||| ||||||| ||||||||    
T  6023729 ctacaattaataaaggtattttagtaaaagctactaaatttaccattgaaatcaacacaattaaacatttccg 6023657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24880914 - 24880986
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttccg 72  Q
    |||||||||||||  ||||||||| | |||||| |||||||| |||||||||||||  ||| |||||||||||    
T  24880914 ctacaattaataaaagtattttagtaaatgatattaattttaccattgaaatcaacataatcaatcatttccg 24880986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9307665 - 9307736
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||| |||||| |||||| | ||| || |||||||| ||||||||||||| || ||||||||||||    
T  9307665 ctacaattaacaagggtgttttagtaaatgctattaattttatcattgaaatcaacacagttaatcatttcc 9307736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22181374 - 22181445
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||| | ||||||| |||||| | |||||| ||||||||| |||||||| ||||||| |||||||||||    
T  22181374 ctacaataactaagggtgttttagtaaatgatattaattttaccattgaaatgaactcaactaatcatttcc 22181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 32970645 - 32970578
Alignment:
Q  3 acaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||| | ||||||||| | || ||| |||||||| ||||||||||||| |||||||||||||    
T  32970645 acaattaatacgagtattttagtaaataatattaattttatcattgaaatcaacacaattaatcattt 32970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37276499 - 37276570
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | | ||||||||||||| |||  |||||||| || ||||||||||||    
T  37276499 ctacaattaataagggtgttttagtaaacgatactaattttaccatcaaaatcaacacagttaatcatttcc 37276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8896412 - 8896343
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||||||   |||||||| | |||||| ||||||||| |||||||||||| |||| ||||||||    
T  8896412 ctacaattaataaatatattttagtaaatgatattaattttaccattgaaatcaacacaatcaatcattt 8896343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16395126 - 16395058
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||||| |||| |||||||| | |||||||||||||||| ||  |||||||| |||||||||||||    
T  16395126 ctacaattaaaaagg-tattttagtaaatgatactaattttactatcaaaatcaacacaattaatcattt 16395058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17988640 - 17988572
Alignment:
Q  1 ctacaattaataagggtattttaggagatgata--ctaatttta-cattgaaatcaactcaattaatca 66  Q
    |||||||||||||| ||||||||| | || |||  ||||||||| ||||||||||||| ||||||||||    
T  17988640 ctacaattaataagagtattttagtaaataatatactaattttaacattgaaatcaacacaattaatca 17988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20209920 - 20209851
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| | |||||| | |||||||||||||||| ||  ||||||||  ||||||||||||    
T  20209920 ctacaattaataaggatgttttagtaaatgatactaattttactatcaaaatcaacataattaatcattt 20209851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 23169069 - 23169004
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||| | |||||| | ||| |||||||||||| |||||||||||| |||||||| ||||    
T  23169069 aattaataaggatgttttagtaaatgctactaattttaccattgaaatcaacacaattaattattt 23169004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31154166 - 31154235
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||  | | ||||| |||| |||||||||||| |||| |||||||| |||||||||||||    
T  31154166 ctacaattaataaatgcaatttagtagataatactaattttatcattaaaatcaacacaattaatcattt 31154235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 42410032 - 42410101
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||  ||||| | |||||| |||||||| |||  |||||||| |||||||||||||    
T  42410032 ctacaattaataagggtgctttagtaaatgatattaattttaccatcaaaatcaacacaattaatcattt 42410101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14757674 - 14757610
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaat 64  Q
    |||||||||||||| || |||||| | ||| ||||||||||| | ||||||||||| ||||||||    
T  14757674 ctacaattaataagagtgttttagtaaatgttactaattttatcgttgaaatcaacacaattaat 14757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16805919 - 16805989
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||| |||||||| | |||||||||||||||| ||| |||||||| ||||||||||||||    
T  16805919 ctacaattaataaggatattttagtaaatgatactaattttactattaaaatcaacacaattaatcatttc 16805989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16845200 - 16845270
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||| |||||||| | |||||||||||||||| ||| |||||||| ||||||||||||||    
T  16845200 ctacaattaataaggatattttagtaaatgatactaattttactattaaaatcaacacaattaatcatttc 16845270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16463727 - 16463798
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | ||||||||||||||| |||  |||||||| |||||||||||||||    
T  16463727 ctacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttcc 16463798  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45235619 - 45235690
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||||| |||||||| ||||||||||||| |||| ||||||||||    
T  45235619 ctacaattaataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaatcaatcatttcc 45235690  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 39691531 - 39691597
Alignment:
Q  4 caattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||| ||||||||| | |||||| |||||||| ||||||||||||| |||||||||||||    
T  39691531 caattaataagagtattttagtaaatgatattaattttatcattgaaatcaacacaattaatcattt 39691597  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37322466 - 37322535
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    |||||||||||||||||||||||  | |||||| |||||||| ||||||||||||| |||| ||||||||    
T  37322466 ctacaattaataagggtattttaataaatgatattaattttaccattgaaatcaacacaatcaatcattt 37322535  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14523447 - 14523376
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |||  ||||||||||    
T  14523447 ctacaattaataaggatattttagtaaatgatattaattttaccattgaaatcaacacaaaaaatcatttcc 14523376  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43410464 - 43410535
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| |||||||| | |||||| |||||||| |||||| |||||| |||||||| ||||||    
T  43410464 ctacaattaataaggatattttagtaaatgatattaattttatcattgatatcaacacaattaataatttcc 43410535  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16377731 - 16377661
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||||||||||| |||||| | | |||||| |||||||| ||||| ||||||| ||||||||||||||    
T  16377731 ctacaattaataaggttattttggtaaatgatattaattttaccattgtaatcaacacaattaatcatttc 16377661  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43115877 - 43115807
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttc 70  Q
    ||||||| |||||| ||||||||| | ||| |||||| |||| ||||||||||||| ||||||||||||||    
T  43115877 ctacaataaataagagtattttagtaaatgctactaactttatcattgaaatcaacacaattaatcatttc 43115807  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1206778 - 1206709
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||| |||||||| | ||| ||||||||||| || ||||||||||  ||||||||||||    
T  1206778 ctacaattaataaggatattttagtaaatgttactaattttaccactgaaatcaacataattaatcattt 1206709  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 19937729 - 19937786
Alignment:
Q  15 ggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||| | |||||| ||||||||| |||||||||||| |||||||||||||||    
T  19937729 ggtattttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttcc 19937786  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5789723 - 5789652
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||  ||||||||||| |||||| ||||  |||||||||||||||    
T  5789723 ctacaattaataagggtgttttagtaaatgccactaattttactattgaattcaatacaattaatcatttcc 5789652  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 8947123 - 8947056
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||| | |||||| | ||  ||||||||||| ||||||||||||| |||||||||||||||    
T  8947123 aattaataaggatgttttagtaaatattactaattttatcattgaaatcaacacaattaatcatttcc 8947056  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15359162 - 15359095
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcat 67  Q
    ||||||||||||||||| |||||| | |||||| |||||||| |||  |||||||| |||||||||||    
T  15359162 ctacaattaataagggtgttttagtaaatgatattaattttatcatcaaaatcaacacaattaatcat 15359095  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25637519 - 25637590
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||| ||| |||||| | |||| |||||||||| |||  |||||||| |||||||||||||||    
T  25637519 ctacaattaataaaggtgttttagtaaatgacactaattttaccatcaaaatcaacacaattaatcatttcc 25637590  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 43699670 - 43699605
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    |||||||| | ||||||||  | |||||||||||||||| |||||||||||| || ||||||||||    
T  43699670 aattaataggtgtattttaataaatgatactaattttactattgaaatcaacacagttaatcattt 43699605  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 35313956 - 35313996
Alignment:
Q  32 tactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  35313956 tactaattttaccattgaaatcaacacaattaatcatttcc 35313996  T

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Target: scaffold0182 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 20427 - 20361
Alignment:
Q  4 caattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||||||  | |||||||||||||||| ||  |||||||| |||||||||||||    
T  20427 caattaataagggtattttactaaatgatactaattttacaatcaaaatcaacacaattaatcattt 20361  T

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Target: scaffold0583 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2063 - 2134
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||| | |||||| | |||||| |||||||| ||||||||| ||| |||||||||| ||||    
T  2063 ctacaattaataaggatgttttagtaaatgatattaattttatcattgaaattaacacaattaatcacttcc 2134  T

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Target: scaffold0302 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16136 - 16207
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    |||||||||||||| || |||||| | ||| || |||||||| |||| |||||||| |||||||||||||||    
T  16136 ctacaattaataagtgtgttttagtaaatgctattaattttatcattaaaatcaacacaattaatcatttcc 16207  T

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Target: scaffold0159 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34096 - 34025
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcatttcc 71  Q
    ||||||||||||||||| |||||| | |||  ||||||||||| |||||| ||||  |||||||||||||||    
T  34096 ctacaattaataagggtgttttagtaaatgccactaattttactattgaattcaatacaattaatcatttcc 34025  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 50246 - 50313
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcatttcc 71  Q
    ||||||||| | |||| ||| | ||||||||||||||| ||||||||| ||| |||||||||||||||    
T  50246 aattaataaagatattatagtaaatgatactaattttatcattgaaattaacacaattaatcatttcc 50313  T

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Target: scaffold0330 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 5432 - 5497
Alignment:
Q  5 aattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||| |||||||| | |||||| |||||||| ||||||| ||||| || ||||||||||    
T  5432 aattaataaggatattttagtaaatgatattaattttaccattgaattcaacacagttaatcattt 5497  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 17077 - 17142
Alignment:
Q  5 aattaataagggtattttaggagatgatactaattttac-attgaaatcaactcaattaatcattt 69  Q
    ||||||||||||| || ||  | ||| |||||||||||| |||||||||||| |||||||||||||    
T  17077 aattaataagggtgttctaataaatgctactaattttaccattgaaatcaacacaattaatcattt 17142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 105722 - 105791
Alignment:
Q  1 ctacaattaataagggtattttaggagatgatactaatttta-cattgaaatcaactcaattaatcattt 69  Q
    ||||||||||||||||| |||||| | | | || |||||||| ||||||||| ||| |||||||||||||    
T  105722 ctacaattaataagggtgttttagtaaacgctattaattttaccattgaaataaacacaattaatcattt 105791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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