View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16355_low_2 (Length: 485)
Name: NF16355_low_2
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16355_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 32 - 468
Target Start/End: Complemental strand, 12122346 - 12121910
Alignment:
| Q |
32 |
tgtaggtccttgatggggacattgttcaaatttatcaaaccccttcaggtcaggttggtagaacatgtataacatatgaacaaaactctttggttgtgtt |
131 |
Q |
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| T |
12122346 |
tgtaggtccttgatggggacattgttcaaatttatcaaaccccttcaactcaggttggtagaacatgtataacatatgaacataactctttggttgtgtt |
12122247 |
T |
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| Q |
132 |
atcaagccaagaaactggtagatatgatcaagaaaaagatttccatgatgcagaaaatcaagattttgttaaccctaagtcacatgaggaaaaatatatt |
231 |
Q |
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| T |
12122246 |
atcaagccaagaaactggtaaatatgatcaagaagtagatttccatgatgtagaaaatcaagattttgttaaccctaagtcacatgaggaaaaatatatt |
12122147 |
T |
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| Q |
232 |
tctagaagggccactctatttagatttcaagtgatcttcacaaactttaacccgatggttcatgaagacattcgtgtacttgaacaactttggggaaatg |
331 |
Q |
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| T |
12122146 |
tctagaagggccactctatttagatttcaagtgatcttcacaaactttaacccgatggttcatgaagacattcgtgtacttgaacaactttgtggaaatg |
12122047 |
T |
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| Q |
332 |
caaaacataagggtacagtggaaattgttaacacaacaaattaaggatggagaagctggatttacaaaatatctatcgaagaatcataattttttaagat |
431 |
Q |
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| T |
12122046 |
caaaacataagggtgtggtggaaattgttaacacaacaaattaaggatggagaagccggatttacaaaatatctatcgaagaatcataattttttaagat |
12121947 |
T |
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| Q |
432 |
tctactagccacaagccttgagatggccgtcttatgt |
468 |
Q |
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| T |
12121946 |
tctactagccacaagccttgagatggccgtctcatgt |
12121910 |
T |
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