View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16355_low_6 (Length: 402)

Name: NF16355_low_6
Description: NF16355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16355_low_6
NF16355_low_6
[»] chr5 (21 HSPs)
chr5 (16-384)||(37408332-37408700)
chr5 (20-159)||(41996205-41996344)
chr5 (20-107)||(42840495-42840582)
chr5 (20-106)||(24655513-24655599)
chr5 (20-106)||(29416782-29416868)
chr5 (20-106)||(39724553-39724639)
chr5 (39-150)||(21699533-21699644)
chr5 (20-107)||(28019148-28019235)
chr5 (26-108)||(42777784-42777866)
chr5 (39-150)||(42730048-42730159)
chr5 (201-258)||(42840737-42840794)
chr5 (190-246)||(41996375-41996431)
chr5 (27-151)||(42413949-42414073)
chr5 (185-294)||(39724714-39724823)
chr5 (203-299)||(42729905-42730001)
chr5 (225-299)||(21699400-21699474)
chr5 (190-256)||(42414622-42414688)
chr5 (57-106)||(16486776-16486825)
chr5 (75-160)||(42406629-42406714)
chr5 (189-258)||(42411680-42411749)
chr5 (57-101)||(40549282-40549326)
[»] chr1 (5 HSPs)
chr1 (31-93)||(19225436-19225498)
chr1 (31-93)||(19219179-19219241)
chr1 (31-93)||(19221525-19221587)
chr1 (262-301)||(368599-368638)
chr1 (26-107)||(361884-361965)
[»] scaffold0068 (2 HSPs)
scaffold0068 (39-150)||(14266-14377)
scaffold0068 (225-299)||(14436-14510)
[»] scaffold0129 (1 HSPs)
scaffold0129 (20-107)||(17137-17224)
[»] chr8 (5 HSPs)
chr8 (56-108)||(15631880-15631932)
chr8 (35-98)||(15338146-15338209)
chr8 (35-98)||(15427211-15427274)
chr8 (35-98)||(15518515-15518578)
chr8 (56-108)||(15600597-15600649)
[»] chr6 (2 HSPs)
chr6 (35-107)||(29300085-29300157)
chr6 (35-102)||(29012844-29012911)
[»] chr2 (1 HSPs)
chr2 (35-107)||(44937794-44937866)
[»] chr4 (1 HSPs)
chr4 (28-93)||(48741975-48742040)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 37408332 - 37408700
Alignment:
Q  16 atggtcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcg 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37408332 atggccaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctca 37408431  T
Q  116 gtatcatgtaccataaaagcaatagatccattcaataccatcaagcgtcttcggaccaaaggaaaatccaaactatcatatacgtaagagggtatgggtg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37408432 gtatcatgtaccataaaagcaatagatccattcaataccatcaagcgtcttcggaccaaatgaaaatccaaactatcatatacgtaagagggtatgggtg 37408531  T
Q  216 ttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccattcaaatatgcgtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37408532 ttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccattcaagtatgcgtgttc 37408631  T
Q  316 aatgctacagtaagaatgtggcacatcagcatcaattttcttccaagagttactgtttaggctatacat 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37408632 aatgctacagtaagaatgtggcacatcagcatcaattttcttccaagagttactgtttaggctatacat 37408700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 41996205 - 41996344
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtat 119  Q
    |||||| || |||| || ||||||| ||| ||||| |||||||||||||||||| | || |||||||||||| |||||||||||||||| | || |||||    
T  41996205 tcaaggtaatgtaaaggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgtagatgtcttggtat 41996304  T
Q  120 catgtaccataaaagcaatagatccattcaataccatcaa 159  Q
     || || ||||||||||||||||||||| |||||||||||    
T  41996305 gatttaacataaaagcaatagatccatttaataccatcaa 41996344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 42840495 - 42840582
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 107  Q
    ||||||||||||||||| |||||||  || |  || ||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  42840495 tcaaggcaaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtag 42840582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 24655599 - 24655513
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 106  Q
    ||||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  24655599 tcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 24655513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 29416782 - 29416868
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 106  Q
    ||||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  29416782 tcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 29416868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 39724553 - 39724639
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 106  Q
    |||||||||||||| |||||||||| ||| || || ||||||||||| |||| |||||| || ||||||||||| ||||||||||||    
T  39724553 tcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaatgta 39724639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 21699644 - 21699533
Alignment:
Q  39 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 138  Q
    |||| ||||| || || |||||||| ||||||| ||||||||||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  21699644 caactacgaagagtttggtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagattaaagcaat 21699545  T
Q  139 agatccattcaa 150  Q
    ||||||||||||    
T  21699544 agatccattcaa 21699533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 28019235 - 28019148
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 107  Q
    |||||||||||||| ||||| |||||||| |  || |||||||||||||||||||  || |||||||| ||||||||||||| |||||    
T  28019235 tcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaagttcacccaagattgaaatgtgaattgtag 28019148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 42777866 - 42777784
Alignment:
Q  26 caaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 108  Q
    ||||||||||| || |||| ||| | ||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||    
T  42777866 caaggtaagggccctacaatgaagatcttagtccatgattcttttacaccgagttcgcctaaaattgaaatgtgaaatgtaga 42777784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 42730159 - 42730048
Alignment:
Q  39 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 138  Q
    |||| ||||| || || |||||||| ||||||| |||||| |||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  42730159 caactacgaagagtttggtccatgaatcctttataccgaggtcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagatgaaagcaat 42730060  T
Q  139 agatccattcaa 150  Q
    ||||||||||||    
T  42730059 agatccattcaa 42730048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 42840737 - 42840794
Alignment:
Q  201 aagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 258  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||    
T  42840737 aagaaggtatgggtgttgtaataaaagattcattgctgaagtcaaatgaaaccaaata 42840794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 41996375 - 41996431
Alignment:
Q  190 atcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaa 246  Q
    ||||| || |||||||||||||||||||||||| |||||||| |||| |||||||||    
T  41996375 atcatttatgtaagagggtatgggtgttgtaatgaaagattcattgctgaagtcaaa 41996431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 42414073 - 42413949
Alignment:
Q  27 aaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtac 126  Q
    ||||||||||||||||||  || || || |||||||| ||||||||||| |  || ||||||||||||||||||| |||| | | ||| |||| || ||     
T  42414073 aaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgtaaatgtctcagtataatttaa 42413974  T
Q  127 cataaaagcaatagatccattcaat 151  Q
     ||  |||||||||| |||||||||    
T  42413973 gatgtaagcaatagagccattcaat 42413949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 39724714 - 39724823
Alignment:
Q  185 aaactatcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaacc 284  Q
    ||||||||||  ||||||||||||||||| |||||||  | |||||| |||  ||||| ||| |||||||| |  | || | |||||||||||  |||||    
T  39724714 aaactatcatccacgtaagagggtatgggagttgtaagcacagattcgttgttgaagttaaatgacaccaattgaaaatgtttttcagttttactcaacc 39724813  T
Q  285 aatgacacac 294  Q
    ||||||||||    
T  39724814 aatgacacac 39724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 42730001 - 42729905
Alignment:
Q  203 gagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccat 299  Q
    ||||||||| ||||||||||  ||||||| |||  ||||||||| |||||||||||  ||| || |||  ||||| || |||||| |||||||||||    
T  42730001 gagggtatgagtgttgtaatgcaagattcattgttgaagtcaaatgacaccaaatatgcatgtgcttctattttagcccaccaattacacactccat 42729905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 21699474 - 21699400
Alignment:
Q  225 aagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccat 299  Q
    ||||||| |||| ||||||||| |||||||||||  ||| || |||  ||||| || ||||||||||||||||||    
T  21699474 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccat 21699400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 42414688 - 42414622
Alignment:
Q  190 atcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaa 256  Q
    ||||| || ||||||||||||||||||| ||||  |||||||  ||| ||||||||| |||||||||    
T  42414688 atcatctatgtaagagggtatgggtgttataatgcaagattcactgctgaagtcaaatgacaccaaa 42414622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 16486776 - 16486825
Alignment:
Q  57 tccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 106  Q
    ||||||||| ||||||||| |  ||||| |||||||||||||||||||||    
T  16486776 tccatgatttctttacaccaaattcacctaaaattgaaatgtgaaatgta 16486825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 42406714 - 42406629
Alignment:
Q  75 cgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaatagatccattcaataccatcaag 160  Q
    |||| |||| ||||||||||||||||||||||||   ||  ||||||| ||  || |||||||||||  ||||||||| |||||||    
T  42406714 cgagttcactcaaaattgaaatgtgaaatgtagatatctttgtatcatttaagatgaaagcaatagactcattcaatatcatcaag 42406629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 42411749 - 42411680
Alignment:
Q  189 tatcatatacgtaagagggtatgggtgttgtaataaaagattccttgcagaagtcaaacgacaccaaata 258  Q
    |||||| || ||||||||||||||||  | ||||  |||||||  ||| |||||||||||||||||||||    
T  42411749 tatcatttatgtaagagggtatgggtaatttaatgcaagattcactgctgaagtcaaacgacaccaaata 42411680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 40549326 - 40549282
Alignment:
Q  57 tccatgattcctttacaccgagctcacccaaaattgaaatgtgaa 101  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||    
T  40549326 tccatgattccttcacaccgacttcacccaaaattgatatgtgaa 40549282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 19225436 - 19225498
Alignment:
Q  31 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 93  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  19225436 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagctcacccaaaattga 19225498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 19219179 - 19219241
Alignment:
Q  31 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 93  Q
    ||||||||||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  19219179 taagggtccaacatcgaagagcttagtccatgattccttgacaccgagttcacccaaaattga 19219241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 19221587 - 19221525
Alignment:
Q  31 taagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 93  Q
    ||||||||||||| | || ||||| |||||||||||||| ||| |||||||||||||||||||    
T  19221587 taagggtccaacatcaaagagcttagtccatgattccttcacatcgagctcacccaaaattga 19221525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 368638 - 368599
Alignment:
Q  262 atctgtttcagttttatccaaccaatgacacactccattc 301  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  368638 atctgtttcagttttacccaaccaatgacacaccccattc 368599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 361965 - 361884
Alignment:
Q  26 caaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 107  Q
    |||| ||| |||||||||| ||| |||||  ||||||||||||| |||||||  ||||| | |||||| |||||||| ||||    
T  361965 caagataatggtccaacaatgaagagctttatccatgattccttcacaccgatttcaccaagaattgatatgtgaaaagtag 361884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 14266 - 14377
Alignment:
Q  39 caacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtagaagcctcggtatcatgtaccataaaagcaat 138  Q
    |||| ||||| || || |||||||| ||||||| ||||||||||||||||||| ||||||||| | |||| | |||  ||| |||||  || ||||||||    
T  14266 caactacgaagagtttggtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagattaaagcaat 14365  T
Q  139 agatccattcaa 150  Q
    ||||||||||||    
T  14366 agatccattcaa 14377  T

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Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 14436 - 14510
Alignment:
Q  225 aagattccttgcagaagtcaaacgacaccaaatagacatctgtttcagttttatccaaccaatgacacactccat 299  Q
    ||||||| |||| ||||||||| |||||||||||  ||| || |||  ||||| || ||||||||||||||||||    
T  14436 aagattcattgctgaagtcaaatgacaccaaatatgcatgtgcttctcttttagcccaccaatgacacactccat 14510  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 17137 - 17224
Alignment:
Q  20 tcaaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 107  Q
    |||| ||||||||| ||||||| |||||| || || ||||| || ||||| |||||||| ||||||| ||| ||||||||||| ||||    
T  17137 tcaatgcaaggtaaaggtccaataacgaagagtttagtccaagactccttcacaccgagttcacccagaatagaaatgtgaaaagtag 17224  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15631880 - 15631932
Alignment:
Q  56 gtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 108  Q
    |||||||||||  |||||||| | ||||||||||||||||||||| |||||||    
T  15631880 gtccatgattctattacaccgggttcacccaaaattgaaatgtgatatgtaga 15631932  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 15338146 - 15338209
Alignment:
Q  35 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 98  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15338146 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15338209  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 15427211 - 15427274
Alignment:
Q  35 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 98  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15427211 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15427274  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 15518515 - 15518578
Alignment:
Q  35 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgt 98  Q
    ||||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| ||||    
T  15518515 ggtccaacaacaaatagtttagtccatgattctttcacgccgagttcacccaaaattgatatgt 15518578  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15600597 - 15600649
Alignment:
Q  56 gtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtaga 108  Q
    |||||||||||  |||||||| | |||||||||||||| |||||| |||||||    
T  15600597 gtccatgattctattacaccgggttcacccaaaattgagatgtgatatgtaga 15600649  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 29300157 - 29300085
Alignment:
Q  35 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 107  Q
    |||||||||  ||| || || ||||| |||||||||| || |||||||||||||||||| |||||||| ||||    
T  29300157 ggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtag 29300085  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 29012911 - 29012844
Alignment:
Q  35 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaa 102  Q
    |||||||||| ||| || || |||||||||||||| |||||||  || ||||||||||| ||||||||    
T  29012911 ggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaa 29012844  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 44937794 - 44937866
Alignment:
Q  35 ggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgtag 107  Q
    ||||||||||| || || || ||||||||||| || || ||||| |||||||||||||| |||||||| ||||    
T  44937794 ggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtag 44937866  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 48741975 - 48742040
Alignment:
Q  28 aggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattga 93  Q
    |||||||||||||| || ||| || || ||||| |||||||| |||||||| ||||| ||||||||    
T  48741975 aggtaagggtccaaaaatgaagagtttagtccaagattccttcacaccgagttcacctaaaattga 48742040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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