View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16356_high_4 (Length: 345)
Name: NF16356_high_4
Description: NF16356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16356_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 345
Target Start/End: Original strand, 44017137 - 44017446
Alignment:
| Q |
30 |
aaatggtggctttacttggagtcggagattaatgtagaagatgagggtgaaggtgaaggtgaaggtaataaaagactactagtttaggagagcacatgca |
129 |
Q |
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| T |
44017137 |
aaatggtgactttacttggagttggagattaatgtagaagatgagggtg------aaggtgaaggtgataaaagactactagtttaggagagcacatgca |
44017230 |
T |
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| Q |
130 |
tgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgag |
229 |
Q |
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| T |
44017231 |
tgatgcttaagtttcacacaaacgttttaaacacaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgag |
44017330 |
T |
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| Q |
230 |
agaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgataga |
329 |
Q |
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| T |
44017331 |
agaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgataga |
44017430 |
T |
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| Q |
330 |
gccaaaaccaaccttg |
345 |
Q |
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| T |
44017431 |
gccaaaaccaaccttg |
44017446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 31037218 - 31037093
Alignment:
| Q |
128 |
catgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagta---gtatgtttaagaagggagataatagag |
224 |
Q |
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| T |
31037218 |
catgatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagag |
31037119 |
T |
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| Q |
225 |
at--gagagaatggtcaaaaaggaat |
248 |
Q |
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| T |
31037118 |
ctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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