View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16357_high_1 (Length: 714)

Name: NF16357_high_1
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16357_high_1
NF16357_high_1
[»] chr2 (1 HSPs)
chr2 (19-699)||(37602605-37603285)


Alignment Details
Target: chr2 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 19 - 699
Target Start/End: Original strand, 37602605 - 37603285
Alignment:
Q  19 gcaacctctctttcatgctgtttttctaacctatatcatatctccatataaaacctagctatatttttccaatctccttcaaccatgcacgtccacatga 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37602605 gcaacctctctttcatgctgtttttctaccctatatcatatctccatataaaacctagctatatttttccaatctccttcaaccatgcacgtccacatga 37602704  T
Q  119 aagctgagttaaaagcaacatccatttcctttcaaaatccaacacttttcaacacacaccaaaacactcctcctcttcctgaaccagaagaactcaaagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37602705 aagctgagttaaaagcaacatccatttcctttcaaaatccaacacttttcaacacacaccaaaacactcctcctcttcctgaaccagaagaactcaaagg 37602804  T
Q  219 ttgtcttggaagcttagatggagcatgtattgaaaagctcttacttcattgtgcaagtgctttggaaagcaatgatataaccttagctcaacaagttatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37602805 ttgtcttggaagcttagatggagcatgtattgaaaagctcttacttcattgtgcaagtgctttggaaagcaatgatataaccttagctcaacaagttatg 37602904  T
Q  319 tgggtcttaaacaacgttgcttcaccattaggtgacacaaaccaaagactcacttcatggtttctgagagcattaatctctagagcttcaaggatttgtc 418  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  37602905 tgggtcttaaacaacgttgcttcaccattaggtgacactaaccaaagactcacttcctggtttctaagagcattaatctctagagcttcaaggatttgtc 37603004  T
Q  419 ctacttcaatgaatttcaaaggaagtaactacacaattcaaagaaggttgatgtccgttaccgaactcgccgggtatgttgatttaattccttggcatag 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37603005 ctacttcaatgaatttcaaaggaagtaactacacaattcaaagaagattgatgtccgttaccgaactcgccgggtatgttgatttaattccttggcatag 37603104  T
Q  519 gtttggtttttgtgcttccaacaatgaaattttcaagtcaattaagggattcaaaagggtacatattttagattttagcataacaccttgtatgcaatgg 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37603105 gtttggtttttgtgcttccaacaatgaaattttcaagtcaattaagggattcaaaagggtacatattttagattttagcataacaccttgtatgcaatgg 37603204  T
Q  619 cctacttttatagattctttggctaaattaccagaaggccctccttcacttagaatcacagttccatcttttaggcctatg 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37603205 cctacttttatagattctttggctaaattaccagaaggccctccttcacttagaatcacagttccatcttttaggcctatg 37603285  T

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