View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16357_high_5 (Length: 345)
Name: NF16357_high_5
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16357_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 329
Target Start/End: Original strand, 34555804 - 34556129
Alignment:
| Q |
4 |
gagtgagaagaatttcctagataaaaatttccaaaaatgattcagcttcttcttaacttcttttttgcgtgtgagttgttcttagccaaatatttttagc |
103 |
Q |
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| T |
34555804 |
gagtgagtagaattccctaggtaaaaatttccaaaaatgattcagcttcttcttaacttcttttttgcgtgtgagttgttcttagccaaatatttttagc |
34555903 |
T |
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| Q |
104 |
cagaagattcattattgatcagtcccgacctcgtgagattgatgtaaaaacacatttgatttaatatttaggatgttttcctttatcattagatacaccg |
203 |
Q |
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| T |
34555904 |
cagaagattcattattgatcagtcccgacctcgtgagattgatgtaaaaacacatttgatttaatattttggatgttttcctttatcattagatacaccg |
34556003 |
T |
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| Q |
204 |
ttgacnnnnnnnnnctggcataacaatttaatttttataaaccattgtcaataagtaaagattaacattattaaaaatacaaggctaatatatagctaac |
303 |
Q |
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| T |
34556004 |
ttgacaaaacaaaactggcacaacaatttaatttttataaaccattgtcaataagtaaagattaacattattaaaaatacaaggctaatatatagctaac |
34556103 |
T |
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| Q |
304 |
ttgtactcaagattagctatccttac |
329 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34556104 |
ttgtactcaagattagctatccttac |
34556129 |
T |
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