View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16357_high_7 (Length: 299)

Name: NF16357_high_7
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16357_high_7
NF16357_high_7
[»] chr8 (2 HSPs)
chr8 (11-281)||(35747100-35747361)
chr8 (26-82)||(29918536-29918594)
[»] chr6 (2 HSPs)
chr6 (30-91)||(34179100-34179164)
chr6 (26-90)||(9402518-9402584)
[»] chr5 (3 HSPs)
chr5 (30-82)||(35584050-35584103)
chr5 (26-90)||(17153098-17153164)
chr5 (30-90)||(16311387-16311448)
[»] chr4 (11 HSPs)
chr4 (26-90)||(42907822-42907887)
chr4 (26-91)||(8843897-8843964)
chr4 (26-91)||(8856861-8856928)
chr4 (28-90)||(21956908-21956971)
chr4 (26-91)||(33616208-33616275)
chr4 (26-82)||(33516174-33516232)
chr4 (26-90)||(36306720-36306786)
chr4 (26-89)||(21714070-21714135)
chr4 (26-81)||(37384208-37384265)
chr4 (26-89)||(7334280-7334343)
chr4 (26-88)||(36919058-36919122)
[»] chr3 (1 HSPs)
chr3 (26-83)||(772894-772952)
[»] chr2 (3 HSPs)
chr2 (26-90)||(25210307-25210373)
chr2 (26-82)||(30696854-30696912)
chr2 (26-88)||(13531879-13531943)
[»] scaffold1322 (1 HSPs)
scaffold1322 (26-92)||(1040-1108)
[»] chr1 (1 HSPs)
chr1 (28-83)||(2581505-2581561)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 35747361 - 35747100
Alignment:
Q  11 cagagaagtgaatgtagtgaaatgatttaggtttgaatttctatttatataaaggggtaatagattgattttcaacattcattcatgatgggtttgggta 110  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  35747361 cagataagtgaatgtagtgaaatgatttaggtttgagtttctatttatataaaggggtaatagattgattttcaacattcat----gatgggtttgggta 35747266  T
Q  111 tcatgcctagctagtaagttacttagcgagtgagagatcattggatatactatgtttgttaatattggatagccaaacccgaaacaagcaatacataaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35747265 tcatgcctagctagtaagttacttagcgagtgagagatcattggatatactatgtttgttaatattggatagccaaacccgaaacaagcaatacataaat 35747166  T
Q  211 cctaacaacctacgctacgaatacaaaagcaaagggacagaacaggttgaggtaagattacttacacaaag 281  Q
    ||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35747165 cctaacaacc-----tacgaatacaaaagcaaagggacagaacaggttgaggtaagattacttacacaaag 35747100  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 29918536 - 29918594
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgatttt 82  Q
    |||||||||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||    
T  29918536 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgatttt 29918594  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 34179164 - 34179100
Alignment:
Q  30 aaatgatttagg-tttgaatttctatttatataaa--ggggtaatagattgattttcaacattca 91  Q
    |||||||||||| ||||| ||||||||||||||||  | ||||||| ||||||||||||||||||    
T  34179164 aaatgatttagggtttgagtttctatttatataaaaagaggtaataaattgattttcaacattca 34179100  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 9402518 - 9402584
Alignment:
Q  26 agtgaaatgattta-ggtttgaatttctatttatataaa-ggggtaatagattgattttcaacattc 90  Q
    |||||||||||||| ||||||  |||||||||||||||| |||||| || |||||||||| ||||||    
T  9402518 agtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttctacattc 9402584  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 35584050 - 35584103
Alignment:
Q  30 aaatgatttagg-tttgaatttctatttatataaaggggtaatagattgatttt 82  Q
    |||||||||||| ||||| |||||||||||||||| |||||||| |||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaagggtaataaattgatttt 35584103  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 17153098 - 17153164
Alignment:
Q  26 agtgaaatgatttaggttt-gaatttctatttatata-aaggggtaatagattgattttcaacattc 90  Q
    |||||||| |||||||||| | |||||||||||| || ||||||||||| |||||||||| ||||||    
T  17153098 agtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttctacattc 17153164  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 16311448 - 16311387
Alignment:
Q  30 aaatgatttaggtttgaatttctatttatataaagggg-taatagattgattttcaacattc 90  Q
    |||||||||||| ||   |||||||||||||||| ||| ||||| |||||||||||||||||    
T  16311448 aaatgatttagggtttggtttctatttatataaaagggataataaattgattttcaacattc 16311387  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 42907822 - 42907887
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatataaaggggtaatagattgattttcaacattc 90  Q
    |||||||||||||||| ||||| |||||||||||||||| | ||| || |||||||||| ||||||    
T  42907822 agtgaaatgatttagggtttgagtttctatttatataaaagagtagtaaattgattttctacattc 42907887  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 8843964 - 8843897
Alignment:
Q  26 agtgaaatgatttaggtttgaa-tttctatttatat-aaaggggtaatagattgattttcaacattca 91  Q
    |||||||||||||||| || || ||||||||||||| |||||||||||| ||| |||||| |||||||    
T  8843964 agtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattca 8843897  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 8856928 - 8856861
Alignment:
Q  26 agtgaaatgatttaggtttgaa-tttctatttatat-aaaggggtaatagattgattttcaacattca 91  Q
    |||||||||||||||| || || ||||||||||||| |||||||||||| ||| |||||| |||||||    
T  8856928 agtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattca 8856861  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 21956971 - 21956908
Alignment:
Q  28 tgaaatgatttagg-tttgaatttctatttatataaaggggtaatagattgattttcaacattc 90  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||| |||||||||| ||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaagggtaataaattgattttctacattc 21956908  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 33616275 - 33616208
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatataaa-ggggtaatagattgattttcaacattca 91  Q
    |||||||||||||||| |||  |||| |||||||||||| ||||||||| |||||||||| |||||||    
T  33616275 agtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttctacattca 33616208  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 33516232 - 33516174
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatataaa-ggggtaatagattgatttt 82  Q
    |||||||||||||||| ||||| ||| |||||||||||| ||||||||| |||||||||    
T  33516232 agtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgatttt 33516174  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 36306720 - 36306786
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatataaa-ggggtaatagattgattttcaacattc 90  Q
    |||||||||||||| | |||  ||||||||||||||||| ||||||||| |||||||||| ||||||    
T  36306720 agtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattc 36306786  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 21714135 - 21714070
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgattttcaacatt 89  Q
    |||||||||||||||| ||||| ||||||||||||| |||| ||||||| ||| |||||| |||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatt 21714070  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 37384208 - 37384265
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgattt 81  Q
    |||||||||||||||| |||||| |||||||||||| |||||| ||||| ||||||||    
T  37384208 agtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 7334343 - 7334280
Alignment:
Q  26 agtgaaatgatttag-gtttgaatttctatttatataaaggggtaatagattgattttcaacatt 89  Q
    ||||||||||||||| |||||| |||||||||||| ||| |  ||||| ||||||||||||||||    
T  7334343 agtgaaatgatttagagtttgagtttctatttataaaaacga-taataaattgattttcaacatt 7334280  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 36919058 - 36919122
Alignment:
Q  26 agtgaaatgatttag-gtttgaatttctatttatat-aaaggggtaatagattgattttcaacat 88  Q
    ||||||||||||||| |||||| ||||||||||||| |||| ||||||| | |||||||| ||||    
T  36919058 agtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttctacat 36919122  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 772952 - 772894
Alignment:
Q  26 agtgaaatgattta-ggtttgaatttctatttatataaaggggtaatagattgattttc 83  Q
    |||||||||||| | ||||||| |||||||||||| ||| |||||||| ||||||||||    
T  772952 agtgaaatgattcaaggtttgagtttctatttatacaaaagggtaataaattgattttc 772894  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 25210307 - 25210373
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgattttcaacattc 90  Q
    |||||||||||||||| ||||| ||||||||||||| ||| |||||| | |||||||||| ||||||    
T  25210307 agtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattc 25210373  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 30696854 - 30696912
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgatttt 82  Q
    ||||| |||||||||| ||||||||||||||||||| ||| |||||||| |||||||||    
T  30696854 agtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgatttt 30696912  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 13531879 - 13531943
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgattttcaacat 88  Q
    |||||||||||||||| ||||| ||||||||||||| ||| || ||||| |||||||||| ||||    
T  13531879 agtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacat 13531943  T

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Target: scaffold1322 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 1040 - 1108
Alignment:
Q  26 agtgaaatgatttagg-tttgaatttctatttatat-aaaggggtaatagattgattttcaacattcat 92  Q
    |||||||||||||| | ||||| ||||||||||||| ||| |||||||| ||| |||||| ||||||||    
T  1040 agtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattcat 1108  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 2581505 - 2581561
Alignment:
Q  28 tgaaatgatttag-gtttgaatttctatttatataaaggggtaatagattgattttc 83  Q
    ||||||||||||| |||||| |||||||||||||||| || || || ||||||||||    
T  2581505 tgaaatgatttagagtttgagtttctatttatataaaaggatattaaattgattttc 2581561  T

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