View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16357_low_3 (Length: 428)
Name: NF16357_low_3
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16357_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 1935329 - 1935726
Alignment:
| Q |
19 |
ctccagagcaaagatggtttgacttgaggcatctgattacttcaaagaactatgatcattaccaaattttcagctgcattgatcaagactttt-ggtttg |
117 |
Q |
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| T |
1935329 |
ctcctgagcaaagatggtttgacttgaggcatctgattacttcaaagaactatgatcattaccaaattttcagctgcattgatcaagactttttggtttg |
1935428 |
T |
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| Q |
118 |
tctgaaaattctgcacacgttttgttgttcctgcgttaaatggcgggagccgagagtggctccatgagttatatctgtgaatgcaccctaatgaatccca |
217 |
Q |
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| T |
1935429 |
tctgaaaattctgcacacgttttgttgttcctgcgttaaatggcgggagccgagagtggctccatgagttatatctgtgaatgcaccctaatgaatccca |
1935528 |
T |
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| Q |
218 |
taattgatgatgaaacaacagtgacttgctcatggccaaacatgcatgtggtactccacgcatgcattatagaattggcctacagcgtttccaattcttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1935529 |
taattgatgatgaaacaacagtgacttgctcatggccaaacatgcatgtggtactccacacatgcattatagaattggcctacagcgtttccaattcttc |
1935628 |
T |
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| Q |
318 |
ccacaaggttttgaattcagtaaaatatccaataacttatacctgtaaattaatagtttcacggcaaccacagttagactctcatttggacatagtat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1935629 |
ccacaaggttttgaattcagtaaaatatccaataacgtatacctgtaaattaatagtttcacggcaaccgcagttagactctcatttggacatagtat |
1935726 |
T |
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