View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16357_low_4 (Length: 376)
Name: NF16357_low_4
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16357_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 30573219 - 30573576
Alignment:
| Q |
1 |
ccatggtgacattgaggcagcatcatatttgattctccttgcaaagaaacctatataatcttatcggtgtgacggaatagctgaagaagttcgagtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573219 |
ccatggtgacattgaggcagcatcatatttgattctccttgcaaagaaacctatataatcttatcggtgtgacggaatagctgaagaagttcgagtaaat |
30573318 |
T |
|
| Q |
101 |
tgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaacttttaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30573319 |
tgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaacttttaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcg |
30573418 |
T |
|
| Q |
201 |
aatcatctttgtttctccttgcaaagaaaccaagtagattgcagcatataagcctcattggttcggattgtaaagtatgagaaaaatctaatgttatgaa |
300 |
Q |
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| T |
30573419 |
aatcatctttgtttctccttgcaaagaaaccaagtagattgcagcatataagtctcattggttcggattgtaaagtatgagaaaaatctaatgttatgaa |
30573518 |
T |
|
| Q |
301 |
aactaattactaaatagaagttgtgttgttcaattttagaaatctatcttgataattc |
358 |
Q |
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| T |
30573519 |
aactaattactaaatagaagttgtgttgttcaattttagaaatctatcttgataattc |
30573576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 30569798 - 30570121
Alignment:
| Q |
10 |
cattgaggcagcatcatatttgattctccttgcaaagaaacctatataatcttatcggtgtgacggaatagctgaagaagttcgagtaaattgacaaagg |
109 |
Q |
| |
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| T |
30569798 |
cattgaggcagcatcatatttgcttctccttgcaaagaaacctatataatcttatgcttgtgaccgaatagctgaagaaggtcgagga------------ |
30569885 |
T |
|
| Q |
110 |
caaagtccctattgcccctgctgatcttgatttaaaggaacttttaaagtgaaggcttcattgaaagagctagatggtgacgttgaggtcgaatcatctt |
209 |
Q |
| |
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|||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |
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| T |
30569886 |
---------tatttcccctgctgatcttgatttagaggaacttctaaagtgaaggctttattgaaagagctagatggtgacattgaggtcgcatcatctt |
30569976 |
T |
|
| Q |
210 |
tgtttctccttgcaaagaaac---------caagtagattgcagcatataagcctcattggttcggattgtaaagtatgagaaaaatctaatgttatgaa |
300 |
Q |
| |
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|||||| |||||||||||||| | || | | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30569977 |
tgtttcgccttgcaaagaaacctatataatcgagagggtcgcagcatataagcgtcattggttcggattgtaaagtatgagaaaaatccaatgttatgaa |
30570076 |
T |
|
| Q |
301 |
aactaattactaa--atagaagttgtgttgttcaattttagaaat |
343 |
Q |
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|| |||||||||| | ||| ||||||||||||||||||||||| |
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| T |
30570077 |
aagtaattactaattagagattttgtgttgttcaattttagaaat |
30570121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 30573107 - 30573269
Alignment:
| Q |
70 |
tgacggaatagctgaagaagttcgagtaaattgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaacttttaaa-gtgaaggcttc |
168 |
Q |
| |
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|||||||| ||||||||||| | || || |||||||||| ||| | ||||| |||||||||||||||||||| | |||||| |||| ||||||||||| |
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| T |
30573107 |
tgacggaagagctgaagaaggtggatgaagttgacaaaggtaaattacctatctcccctgctgatcttgatttagaagaacttctaaaagtgaaggcttc |
30573206 |
T |
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| Q |
169 |
attgaaagagctagatggtgacgttgaggtcgaatcatctttgtttctccttgcaaagaaacc |
231 |
Q |
| |
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|||||||||||| |||||||| |||||| | ||||| |||| ||||||||||||||||||| |
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| T |
30573207 |
attgaaagagctccatggtgacattgaggcagcatcatatttgattctccttgcaaagaaacc |
30573269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 30569570 - 30569647
Alignment:
| Q |
100 |
ttgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaactt-ttaaagtgaaggcttcattgaaag |
176 |
Q |
| |
|
|||||||||| |||||| ||||| ||| |||||||||||||||| | |||||| | |||||||||||||||||||||| |
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| T |
30569570 |
ttgacaaaggtaaagtctctatttcccttgctgatcttgatttagaagaacttctaaaagtgaaggcttcattgaaag |
30569647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 30569720 - 30569776
Alignment:
| Q |
231 |
caagtagattgcagcatataagcctcattggttcggattgtaaagtatgagaaaaat |
287 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| |
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| T |
30569720 |
caagtagattgcagcatacaagtctcattggttcggattgtaaggcatgagaaaaat |
30569776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 30569950 - 30570007
Alignment:
| Q |
3 |
atggtgacattgaggcagcatcatatttgattctccttgcaaagaaacctatataatc |
60 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||| |
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|
| T |
30569950 |
atggtgacattgaggtcgcatcatctttgtttcgccttgcaaagaaacctatataatc |
30570007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38419673 - 38419720
Alignment:
| Q |
1 |
ccatggtgacattgaggcagcatcatatttgattctccttgcaaagaa |
48 |
Q |
| |
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||||||| |||||||||||||||||| |||| |||||||||||||||| |
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| T |
38419673 |
ccatggtaacattgaggcagcatcatctttgcttctccttgcaaagaa |
38419720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 38419591 - 38419720
Alignment:
| Q |
100 |
ttgacaaaggcaaagtccctattgcccctgctgatcttgatttaaaggaacttttaaa-gtgaaggcttcattgaaagagctagatggtgacgttgaggt |
198 |
Q |
| |
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|||||||||| |||| | |||| | ||| |||||||||| ||| | |||||| |||| |||||| | ||| ||||||| || ||||| || |||||| |
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| T |
38419591 |
ttgacaaaggtaaagcctctatggtacctactgatcttgacttagaagaacttctaaaagtgaagacatcactgaaagatctccatggtaacattgaggc |
38419690 |
T |
|
| Q |
199 |
cgaatcatctttgtttctccttgcaaagaa |
228 |
Q |
| |
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| |||||||||| |||||||||||||||| |
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| T |
38419691 |
agcatcatctttgcttctccttgcaaagaa |
38419720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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