View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16357_low_5 (Length: 351)
Name: NF16357_low_5
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16357_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 50 - 344
Target Start/End: Original strand, 34042726 - 34043020
Alignment:
| Q |
50 |
atttgcatgctcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgttgtgttagattcttctcccgctttgtgtttca |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042726 |
atttgcatgctcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgttgtgttagattcttctcccgctttgtgtttca |
34042825 |
T |
|
| Q |
150 |
tgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34042826 |
tgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggag |
34042925 |
T |
|
| Q |
250 |
taatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaatattcttcg |
344 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34042926 |
tgatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaatattgttcg |
34043020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 171 - 344
Target Start/End: Complemental strand, 4046366 - 4046193
Alignment:
| Q |
171 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
270 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
|
| Q |
271 |
tccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctggaggtaatattcttcg |
344 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctggaggtaatattgttcg |
4046193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University