View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16357_low_7 (Length: 303)
Name: NF16357_low_7
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16357_low_7 |
 | |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0102 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 49 - 303
Target Start/End: Original strand, 26380043 - 26380297
Alignment:
| Q |
49 |
aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26380043 |
aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatggttcttctc |
26380142 |
T |
|
| Q |
149 |
attctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggag |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380143 |
attctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttcctttttggag |
26380242 |
T |
|
| Q |
249 |
tagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctcttgat |
303 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
26380243 |
cagcgatgagattatcaataacaatgatcatcatcatcatcaattgtctcttgat |
26380297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36429585 - 36429878
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
36429585 |
tgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggt |
36429684 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| ||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
36429685 |
ttatgatgaatagcatggacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaatca |
36429784 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
36429785 |
atcactttttaacc------ctcattcaaatggatttcttttttggagcagcgatgagatt---accaacaacaatgatcatcatcatcaattgtctctt |
36429875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 5348019 - 5348309
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5348019 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaggg |
5348118 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
5348119 |
ttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaatca |
5348218 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
5348219 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaaca------atgatcatcatcaattgtctctt |
5348306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27455223 - 27455516
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27455223 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggt |
27455322 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
27455323 |
ttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaataa |
27455422 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
27455423 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagatt---accaacaacaatgatcatcatcatcaattgtctctt |
27455513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 37 - 299
Target Start/End: Complemental strand, 49681850 - 49681590
Alignment:
| Q |
37 |
gaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaaca |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || ||||| |
|
|
| T |
49681850 |
gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca |
49681751 |
T |
|
| Q |
137 |
atggttcttctcattctcatgatgttactgttccatcatcact------catgtc-tcatcttcagaatcaatcactttttaaccctcaggctcattcaa |
229 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
49681750 |
acgattcttctcattctcatgatgttactgttccatcatcactgaatagcatgtcttaatctttagaatcaatcactttttaacc------ctcattcaa |
49681657 |
T |
|
| Q |
230 |
atgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctct |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49681656 |
atgggtttcctttttggagcagcgatgagattat---caacaacaatgatcatcatcatcaattgtctct |
49681590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36067618 - 36067911
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36067618 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
36067717 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||| || ||| || ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||| |
|
|
| T |
36067718 |
ttatgatgaatagcatgaacaacaacatcaacaataacggttcttctcattctcatgatgttactgttccatcgtaactcatgtctcctcttcaaaatca |
36067817 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36067818 |
atcactttttaac------tctcattcaaatggatttcctttttggagcagcgatgagattat---caacaacaatgatcatcatcatcaattgtctctt |
36067908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 17732638 - 17732345
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17732638 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggg |
17732539 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17732538 |
ttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaatca |
17732439 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
17732438 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattat---caacaacactgatcatcatcatcaattgtctctt |
17732348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 30709796 - 30710089
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30709796 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggt |
30709895 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30709896 |
ttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaatca |
30709995 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
30709996 |
atcactttttaacc------ctcattcaaatggatttcttttttggagcagcgatgagatt---accaacaacaatgatcatcatcatcaattgtctctt |
30710086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 15347728 - 15348018
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15347728 |
tgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaggg |
15347827 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||| | ||||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
15347828 |
ttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatattattgttccatcatcactcatgtctcctctttagaatca |
15347927 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
15347928 |
atcactttttaacc------ctcattcaaatggatttccattttggagcagcgatgagattatcaacaaca------atgatcatcatcaattgtctctt |
15348015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 6009251 - 6008964
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
6009251 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaaggg |
6009152 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6009151 |
ttatgatgaatagcatgaacaccaacatcaacatcaatgtttcttctcattctca------tattgttccatcatcactcatgtctcctcttcagaatca |
6009058 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6009057 |
atcacttttgaacc------ctcattcaaatggatttcctttttggagcagcgatgagattat---caacaacaatgatcatcatcatcaattgtctctt |
6008967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 50838081 - 50837787
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50838081 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggg |
50837982 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50837981 |
ttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaatca |
50837882 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
50837881 |
atcactttttaaccc-----ctcattcaaatggatttcctttttggagcagcgatgaaattat---caacaacactgatcatcatcatcaattgtctctt |
50837790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 47470997 - 47471289
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47470997 |
tgttaccttcttgaattaatcaacaacaaccctttggaat-catcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggt |
47471095 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||| ||||||| ||| |||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47471096 |
ttataatgaatagcatgaacaacaacatcaacatcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaatca |
47471195 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
47471196 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagatt---accaacaacaatgatcatcatcatcaattgtctctt |
47471286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 54560329 - 54560619
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54560329 |
tgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaggg |
54560428 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
54560429 |
ttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcataatca |
54560528 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
54560529 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaaca------atgatcatcatcaattgtctctt |
54560616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 32655 - 32948
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32655 |
tgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggt |
32754 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
32755 |
ttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctccttttcagaatca |
32854 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
32855 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagtgatgagatt---accaacaacaatgatcatcatcatcaattgtctctt |
32945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 47445604 - 47445311
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47445604 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggt |
47445505 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||| ||||||| ||| |||||||||| || || ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
47445504 |
ttataatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcaccactcatgtctcctcttcagaatca |
47445405 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| | |||||||||| | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
47445404 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcaacgatgagatt---accaacaacaatgatcatcatcataaattgtctctt |
47445314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 20112109 - 20111818
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20112109 |
tgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggt |
20112010 |
T |
|
| Q |
101 |
tt-atgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatc |
199 |
Q |
| |
|
|| |||||||||| ||| |||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20112009 |
tttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcaaaatc |
20111910 |
T |
|
| Q |
200 |
aatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctct |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
20111909 |
aatcactttttaacc------ctcattcaaatggattttctttttggagcagcgatgagattaccaacaaca------atgatcatcatcaattgtctct |
20111822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 14790973 - 14791263
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14790973 |
tgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaaggg |
14791072 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || || ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14791073 |
ttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaatca |
14791172 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
14791173 |
atcactttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaaca------atgatcatcatcaattgtctctt |
14791260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18308871 - 18308911
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaatt |
41 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
18308871 |
tgttaccatcttgaattaatcaacaacaactctttggaatt |
18308911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 10256012 - 10256293
Alignment:
| Q |
13 |
gaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10256012 |
gaattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata |
10256111 |
T |
|
| Q |
113 |
acattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaa |
212 |
Q |
| |
|
||| |||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |
|
|
| T |
10256112 |
gcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttgagaatcaatcactttctaa |
10256211 |
T |
|
| Q |
213 |
ccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctcttgat |
303 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10256212 |
cc------ctcattcaaatggatttccattttggagcagcgatgagatt---accaacaacaatgatcatcatcatcaattgtctcttgat |
10256293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 4592921 - 4593205
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592921 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaggg |
4593020 |
T |
|
| Q |
101 |
ttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatca |
200 |
Q |
| |
|
|||||||||||| ||| |||| ||| || ||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
4593021 |
ttatgatgaatagcatgaacaccaa------catcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcataatca |
4593114 |
T |
|
| Q |
201 |
atcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaattgtctctt |
300 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4593115 |
atcactttttaacc------ctcattcaaatgaatttcctttttggagcagcgatgagattatcaacaaca------atgatcatcatcaattgtctctt |
4593202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10255976 - 10256027
Alignment:
| Q |
1 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255976 |
tgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca |
10256027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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