View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16357_low_9 (Length: 285)
Name: NF16357_low_9
Description: NF16357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16357_low_9 |
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| [»] scaffold0388 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 19418018 - 19417758
Alignment:
| Q |
8 |
cgaagaatatctggcttttcccctcaaggaagaaagcttgatttgctaggtgacccttgctttgcctagcaaacttaaaatatcagaacttctataaata |
107 |
Q |
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| T |
19418018 |
cgaataatatctggcttttcccttcaaggtagaaagctcgatttgctaggtgacccttgctttgcctagcaaacttaaaatatcagaacttctataaata |
19417919 |
T |
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| Q |
108 |
gaggtgtagctcatttttataggagttaattgatgtaatatgaaacaaataaagagaaaacagagggcagagagtgtgagcaaccattgaagggctaata |
207 |
Q |
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| T |
19417918 |
gaggtgtagctcatttttgtaggagttaattgatgtaatacgaaacaaatagagagaaaacaaagggcagagagtgtgagcaaccattgaagggctaata |
19417819 |
T |
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| Q |
208 |
agcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttat |
268 |
Q |
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| T |
19417818 |
agcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatattagttat |
19417758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 7395393 - 7395321
Alignment:
| Q |
190 |
accattgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgtt |
262 |
Q |
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| T |
7395393 |
accattgaagggctaggaatcttggaatcaagcttgttgatgcttctccaacagctatcaactctcttatgtt |
7395321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 25034982 - 25035040
Alignment:
| Q |
211 |
ttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttatg |
269 |
Q |
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| T |
25034982 |
ttggaatcaagcttgttgatgcttctccaacatctatcaactctcctatgttagttatg |
25035040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 44119099 - 44119177
Alignment:
| Q |
190 |
accattgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttat |
268 |
Q |
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| T |
44119099 |
accattggagggctaggaagcttgaaatcaagcttgttgacgcttcacaaacatctatcaactctcttatgttagttat |
44119177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 798793 - 798714
Alignment:
| Q |
190 |
accattgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttatg |
269 |
Q |
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| T |
798793 |
accattggagggctaggaagcttggaatcaagtttgttgatgcttcgccaacatctatgatgtctcttatgttagttatg |
798714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 10583615 - 10583677
Alignment:
| Q |
207 |
aagcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttatg |
269 |
Q |
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| T |
10583615 |
aagcttggaatcaagcttggtgatgcttctccaatatctatcaactatcttatgttagttatg |
10583677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 25373646 - 25373554
Alignment:
| Q |
33 |
aaggaagaaagcttgatttgctaggtgacccttgctttgcctagcaaacttaaaatatcagaacttctataaatagaggtgtagctcattttt |
125 |
Q |
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| T |
25373646 |
aaggaagaaagcgtgattcgctaagaaagccttgcttcacctagcaaacttaaaattacaaaacctctgtaaatagaggtgtaactcattttt |
25373554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 14526525 - 14526562
Alignment:
| Q |
210 |
cttggattcaagcttgttgatgcatctccaacatctat |
247 |
Q |
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| T |
14526525 |
cttgaattcaagcttgttgatgcatctccaacatctat |
14526562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 20618237 - 20618161
Alignment:
| Q |
192 |
cattgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttatg |
269 |
Q |
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| T |
20618237 |
cattgaagggctaggaagattggaatcaatattggcaatgcttctccaacatctatcaactctc-tatgttagttatg |
20618161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 25373512 - 25373431
Alignment:
| Q |
169 |
agagggcagagagtgtgagcaaccattgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaa |
250 |
Q |
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| T |
25373512 |
agagggcagagggcgtgaaacaccattggagggctaggaagcttaaattcaagcttgttgatgcatgttaaacatctatcaa |
25373431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 15583220 - 15583145
Alignment:
| Q |
193 |
attgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttat |
268 |
Q |
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| T |
15583220 |
attggagggctaggaagcttggattccaacttgttgatgcttatccaacatctatcaaccttcttttgttagttat |
15583145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0388 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0388
Description:
Target: scaffold0388; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 6128 - 6030
Alignment:
| Q |
153 |
caaataaagagaaaacagagggcagagagtgtgagcaaccattgaagggctaataagcttggattcaagcttgttgatgcatctccaacatctatcaac |
251 |
Q |
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|||||| ||||| ||||||||||||| || |||| | ||||| |||| | |||||||||| ||||||| |||||| ||||||||||||||||||| |
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| T |
6128 |
caaatagagagagaacagagggcagaaagcatgagacatcattggaggggcaggaagcttggatacaagcttcttgatgaatctccaacatctatcaac |
6030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 2136586 - 2136525
Alignment:
| Q |
208 |
agcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttatg |
269 |
Q |
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| T |
2136586 |
agcttggattcaagcttgttgatgtttctccaatatgtatcaaccttcttttgttagttatg |
2136525 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 28609012 - 28609072
Alignment:
| Q |
208 |
agcttggattcaagcttgttgatgcatctccaacatctatcaactctcttatgttagttatg |
269 |
Q |
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| T |
28609012 |
agcttggattcaagctt-ttgatgcttctccaacatctttcaaccttctcttgttagttatg |
28609072 |
T |
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