View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16358_low_1 (Length: 573)
Name: NF16358_low_1
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16358_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 43506424 - 43506978
Alignment:
| Q |
1 |
aacacgttcttcacattccttatcttcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatcc |
100 |
Q |
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| T |
43506424 |
aacacgttcttcacattccttatcttcaaccacgtcattatcatcattaccatctccaccatcattctcataaatcttcacaagcctaatctccgcatcc |
43506523 |
T |
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| Q |
101 |
ttaagtagcttctcataagcttcatgcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctc |
200 |
Q |
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| T |
43506524 |
ttaagtagcttctcataagcttcatgcatctcatctttttgcaaaagctctttataaccacgcttctcattctcaacattttctctacatttagtttctc |
43506623 |
T |
|
| Q |
201 |
tttccgtaacatgaattatccacttttgttcatcaatctcaggaggccgaggaagggcaacaatctcttccaattgacgtaacaaatgtgcttcgaggtc |
300 |
Q |
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| T |
43506624 |
tttccgtaacatgaattatccacttttgttcatcaatctcaggaggccgaggaagggcaacaatctcttccaattgacgtaacaaatgtgcttcgaggtc |
43506723 |
T |
|
| Q |
301 |
gacgagtttagccttggcattgtcgacttcttcgtgggtgggccgatcgcctatgaggttgaggactgatcgggcttgtgagacgtcggagatggcgtgg |
400 |
Q |
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| T |
43506724 |
gacgagtttagccttcgcattgtcgacttcttcgtgggtgggccgatcgcctatgaggttgaggactgatcgggcttgtgagacgtcggagatggcgtgg |
43506823 |
T |
|
| Q |
401 |
gtcatcgcggcgaggagttttgggtctgtgagattgggcatttggccgatgattgaggaggagggtggtggttgttcgacatcggatttagatggtgagg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43506824 |
gtcatcgcggcgaggagttttgggtctgtgagattgggcatttggccgatgattgaggaggagggtggtggttgttcgacatcggatttagatggtgagg |
43506923 |
T |
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| Q |
501 |
atttggaggtgaaggatgggagacgggacatgacgtaattgaggattgggtaggt |
555 |
Q |
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| T |
43506924 |
atttggaggtgaaggatgggagacgggacatgacgtaattgaggattgggtaggt |
43506978 |
T |
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