View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16358_low_10 (Length: 239)

Name: NF16358_low_10
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16358_low_10
NF16358_low_10
[»] chr8 (4 HSPs)
chr8 (1-108)||(203270-203377)
chr8 (1-108)||(318107-318214)
chr8 (152-220)||(203421-203489)
chr8 (152-220)||(318258-318326)
[»] chr1 (4 HSPs)
chr1 (1-108)||(16450254-16450361)
chr1 (1-108)||(16459830-16459937)
chr1 (152-220)||(16450405-16450473)
chr1 (152-220)||(16459981-16460049)
[»] chr4 (1 HSPs)
chr4 (2-87)||(8160877-8160962)
[»] chr7 (2 HSPs)
chr7 (38-94)||(25904163-25904219)
chr7 (152-221)||(25904036-25904105)
[»] chr2 (2 HSPs)
chr2 (1-63)||(3204033-3204095)
chr2 (156-219)||(3203903-3203965)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 203270 - 203377
Alignment:
Q  1 caaaaattatcaggagtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagtttcatggc 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  203270 caaaaattatcagatgtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagtttcatggt 203369  T
Q  101 atagatgc 108  Q
    ||||||||    
T  203370 atagatgc 203377  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 318107 - 318214
Alignment:
Q  1 caaaaattatcaggagtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagtttcatggc 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  318107 caaaaattatcagatgtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagtttcatggt 318206  T
Q  101 atagatgc 108  Q
    ||||||||    
T  318207 atagatgc 318214  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 203421 - 203489
Alignment:
Q  152 tgagattagatccggtgtggtagtgattaatgagtgtaattaatctaatggttaaatttagtggtacac 220  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  203421 tgagattagatccggtgtggtagtaactaatgagtgtaattaatctaatggttaaatttagtggtacac 203489  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 318258 - 318326
Alignment:
Q  152 tgagattagatccggtgtggtagtgattaatgagtgtaattaatctaatggttaaatttagtggtacac 220  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  318258 tgagattagatccggtgtggtagtaactaatgagtgtaattaatctaatggttaaatttagtggtacac 318326  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16450254 - 16450361
Alignment:
Q  1 caaaaattatcaggagtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagtttcatggc 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  16450254 caaaaattatcagatgtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatggtttagacaagagtgtgaggatggaaacagtttcatggc 16450353  T
Q  101 atagatgc 108  Q
    ||||||||    
T  16450354 atagatgc 16450361  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16459830 - 16459937
Alignment:
Q  1 caaaaattatcaggagtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagtttcatggc 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  16459830 caaaaattatcagatgtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatggtttagacaagagtgtgaggatggaaacagtttcatggc 16459929  T
Q  101 atagatgc 108  Q
    ||||||||    
T  16459930 atagatgc 16459937  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 16450405 - 16450473
Alignment:
Q  152 tgagattagatccggtgtggtagtgattaatgagtgtaattaatctaatggttaaatttagtggtacac 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16450405 tgagattagatccggtgtggtagtgactaatgagtgtaattaatctaatggttaaatttagtggtacac 16450473  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 16459981 - 16460049
Alignment:
Q  152 tgagattagatccggtgtggtagtgattaatgagtgtaattaatctaatggttaaatttagtggtacac 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16459981 tgagattagatccggtgtggtagtgactaatgagtgtaattaatctaatggttaaatttagtggtacac 16460049  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 8160962 - 8160877
Alignment:
Q  2 aaaaattatcaggagtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggag 87  Q
    ||||||| || ||||||  |||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  8160962 aaaaattgtctggagtggtgatgcaattgaagtagaaattgagtaaaccaaaccataatattttaaacaatagtgtgaggatggag 8160877  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 25904219 - 25904163
Alignment:
Q  38 aattgagtaaaccaaaccataatgttttagacaagagtgtgaggatggagacagttt 94  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  25904219 aattgagtaaaccaaaccataatattttagacaagaatgtgaggatggagacagttt 25904163  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 25904105 - 25904036
Alignment:
Q  152 tgagattagatccggtgtggtagtgattaatgagtgtaattaatctaatggttaaatttagtggtacact 221  Q
    |||||||||||||  || |||||| | ||||||||||| ||||||||||||||||| |||| ||||||||    
T  25904105 tgagattagatcctatgcggtagtaactaatgagtgtatttaatctaatggttaaaattagcggtacact 25904036  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3204095 - 3204033
Alignment:
Q  1 caaaaattatcaggagtgaagatgcaattgaagtagaaattgagtaaaccaaaccataatgtt 63  Q
    ||||| ||||| | |||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  3204095 caaaagttatctgaagtggagattcaattgtagtagaaattgagtaaaccaaaccataatgtt 3204033  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 3203965 - 3203903
Alignment:
Q  156 attagatccggtgtggtagtgattaatgagtgtaattaatctaatggttaaatttagtggtaca 219  Q
    |||||||||  | |||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  3203965 attagatcctatatggtagtgat-aatgagtgtatttaatctgatggttaaatttagtggtaca 3203903  T

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