View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16358_low_11 (Length: 239)

Name: NF16358_low_11
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16358_low_11
NF16358_low_11
[»] scaffold0017 (1 HSPs)
scaffold0017 (11-238)||(42215-42443)
[»] chr8 (12 HSPs)
chr8 (11-239)||(18617421-18617650)
chr8 (39-216)||(21495807-21495987)
chr8 (39-216)||(22884945-22885127)
chr8 (96-239)||(41508666-41508809)
chr8 (168-239)||(18610785-18610856)
chr8 (96-187)||(45476020-45476112)
chr8 (100-239)||(20708244-20708385)
chr8 (110-239)||(16000622-16000753)
chr8 (96-187)||(21233662-21233754)
chr8 (168-216)||(16041133-16041182)
chr8 (168-216)||(16042809-16042858)
chr8 (100-239)||(18262991-18263132)
[»] scaffold0833 (1 HSPs)
scaffold0833 (11-239)||(1609-1838)
[»] chr7 (9 HSPs)
chr7 (11-239)||(47482431-47482660)
chr7 (18-239)||(48623873-48624095)
chr7 (39-216)||(3048213-3048393)
chr7 (41-216)||(13319783-13319961)
chr7 (96-224)||(25122770-25122898)
chr7 (120-239)||(7286042-7286160)
chr7 (168-239)||(14252908-14252979)
chr7 (100-239)||(9641498-9641639)
chr7 (96-239)||(28388887-28389032)
[»] chr5 (8 HSPs)
chr5 (14-239)||(7527577-7527803)
chr5 (41-239)||(17908164-17908363)
chr5 (85-239)||(23985874-23986028)
chr5 (41-216)||(32949594-32949772)
chr5 (96-239)||(2030372-2030515)
chr5 (120-239)||(25003444-25003563)
chr5 (168-239)||(34937976-34938047)
chr5 (100-239)||(23235985-23236126)
[»] chr2 (9 HSPs)
chr2 (40-239)||(22254786-22254987)
chr2 (11-239)||(28032583-28032811)
chr2 (11-239)||(17203002-17203231)
chr2 (41-179)||(25254853-25254993)
chr2 (68-216)||(23779422-23779574)
chr2 (66-239)||(32464398-32464570)
chr2 (168-239)||(42179974-42180045)
chr2 (79-239)||(16294321-16294483)
chr2 (189-239)||(7513621-7513671)
[»] scaffold0335 (1 HSPs)
scaffold0335 (41-239)||(9620-9819)
[»] chr6 (10 HSPs)
chr6 (65-238)||(16301584-16301755)
chr6 (39-216)||(32278117-32278297)
chr6 (65-216)||(29664727-29664880)
chr6 (74-239)||(14150999-14151165)
chr6 (78-239)||(27739537-27739701)
chr6 (168-239)||(19627855-19627926)
chr6 (96-239)||(31469116-31469261)
chr6 (100-239)||(19670935-19671076)
chr6 (191-239)||(35010882-35010930)
chr6 (123-187)||(26523725-26523790)
[»] scaffold0125 (1 HSPs)
scaffold0125 (41-239)||(29960-30161)
[»] chr3 (13 HSPs)
chr3 (41-239)||(9304221-9304422)
chr3 (39-216)||(14283791-14283971)
chr3 (39-239)||(12903353-12903556)
chr3 (39-216)||(23887686-23887866)
chr3 (39-216)||(38166532-38166712)
chr3 (41-216)||(11987665-11987843)
chr3 (41-216)||(17936729-17936908)
chr3 (96-239)||(51962704-51962847)
chr3 (39-216)||(11480578-11480759)
chr3 (120-239)||(18738353-18738474)
chr3 (168-239)||(54040152-54040223)
chr3 (168-239)||(54049439-54049510)
chr3 (96-239)||(11636956-11637101)
[»] scaffold0207 (1 HSPs)
scaffold0207 (39-216)||(16432-16612)
[»] scaffold0001 (1 HSPs)
scaffold0001 (79-239)||(165948-166107)
[»] scaffold0615 (1 HSPs)
scaffold0615 (68-239)||(7569-7742)
[»] scaffold0342 (1 HSPs)
scaffold0342 (39-216)||(2169-2349)
[»] scaffold0066 (2 HSPs)
scaffold0066 (41-216)||(44551-44729)
scaffold0066 (41-216)||(52747-52925)
[»] scaffold0162 (2 HSPs)
scaffold0162 (65-216)||(17734-17886)
scaffold0162 (96-239)||(9574-9717)
[»] scaffold0032 (1 HSPs)
scaffold0032 (39-216)||(14944-15125)
[»] scaffold0029 (1 HSPs)
scaffold0029 (39-216)||(67179-67360)
[»] chr4 (12 HSPs)
chr4 (39-216)||(9793809-9793990)
chr4 (65-216)||(32462032-32462185)
chr4 (39-216)||(22736983-22737161)
chr4 (65-216)||(23271675-23271828)
chr4 (120-239)||(55378348-55378466)
chr4 (68-216)||(8043531-8043682)
chr4 (83-216)||(14503083-14503219)
chr4 (168-239)||(19699178-19699249)
chr4 (168-239)||(19709763-19709834)
chr4 (100-239)||(13448617-13448758)
chr4 (100-239)||(13595606-13595747)
chr4 (170-236)||(7848885-7848951)
[»] scaffold0686 (2 HSPs)
scaffold0686 (96-239)||(28-171)
scaffold0686 (106-239)||(7508-7640)
[»] scaffold0132 (1 HSPs)
scaffold0132 (96-239)||(12352-12495)
[»] scaffold0023 (1 HSPs)
scaffold0023 (41-216)||(58027-58206)
[»] scaffold0016 (1 HSPs)
scaffold0016 (106-239)||(167711-167843)
[»] scaffold1486 (1 HSPs)
scaffold1486 (41-216)||(1422-1601)
[»] scaffold0173 (1 HSPs)
scaffold0173 (40-202)||(3930-4094)
[»] scaffold0012 (1 HSPs)
scaffold0012 (31-216)||(35321-35507)
[»] scaffold1666 (1 HSPs)
scaffold1666 (39-187)||(1100-1251)
[»] scaffold0138 (3 HSPs)
scaffold0138 (168-239)||(26831-26902)
scaffold0138 (168-239)||(27846-27917)
scaffold0138 (168-239)||(39842-39913)
[»] scaffold0892 (1 HSPs)
scaffold0892 (176-239)||(2426-2489)
[»] scaffold0158 (1 HSPs)
scaffold0158 (168-239)||(23393-23464)
[»] chr1 (2 HSPs)
chr1 (168-239)||(20252723-20252794)
chr1 (69-184)||(18164597-18164712)
[»] scaffold0191 (1 HSPs)
scaffold0191 (168-239)||(259-331)
[»] scaffold0561 (1 HSPs)
scaffold0561 (79-239)||(4343-4505)
[»] scaffold0165 (2 HSPs)
scaffold0165 (96-239)||(28553-28698)
scaffold0165 (96-187)||(20569-20661)
[»] scaffold0009 (1 HSPs)
scaffold0009 (120-239)||(98563-98683)
[»] scaffold0020 (1 HSPs)
scaffold0020 (96-239)||(104398-104541)
[»] scaffold0133 (1 HSPs)
scaffold0133 (100-239)||(3286-3427)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-216)||(35746-35794)
[»] scaffold0258 (1 HSPs)
scaffold0258 (123-185)||(8740-8803)
[»] scaffold0148 (1 HSPs)
scaffold0148 (100-164)||(36352-36416)


Alignment Details
Target: scaffold0017 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 42215 - 42443
Alignment:
Q  11 catcatcatcaatattcgtcatttacaaaattaatcataacatgacaccaaa-ttcatcaaatacaaacatcaccattaatcacgtacaaccacaagtac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  42215 catcatcatcaatattcgtcatttacaaaattaatcataacatgacaccaaaattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtaa 42314  T
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  42315 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccaatctgaccaataattaggccgt 42414  T
Q  210 cgcccatgatgccgatagaacatcataat 238  Q
    |||||||||||||||||||||||||||||    
T  42415 cgcccatgatgccgatagaacatcataat 42443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 18617421 - 18617650
Alignment:
Q  11 catcatcatcaatattcgtcatttacaaaattaatcataacatgacaccaaa-ttcatcaaatacaaacatcaccattaatcacgtacaaccacaagtac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  18617421 catcatcatcaatattcgtcatttacaaaattaatcataacatgacaccaaaattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtat 18617520  T
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  18617521 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctaaatgcatgcggtaccgatctcaccaatatttaggtcgt 18617620  T
Q  210 cgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||  ||||||||||||||    
T  18617621 cgcccatgatgccggcagaacatcataatc 18617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 21495987 - 21495807
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21495987 aattaatcataacatgacacaacaatccatcaagtacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 21495888  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  |||||||||||||||||||||||  ||||||||||||||||| | || ||||||||||||||||||||||||||    
T  21495887 gtcacctcatgatatgatcctagacacaacacctatatgcatgcggtactggtcatcaccaatatttaggccgtcgcccat 21495807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 22884945 - 22885127
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22884945 aattaatcataacatgacacaacaatccatcaagtataaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 22885044  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata--tttaggccgtcgcccat 216  Q
    | |||   |||||||||||||||||||||| |||||||||||| ||||||| || |||||||||  |||||||||||||||||    
T  22885045 gtcaccttatgatatgatcctagacacaacatctatatgcatgtggtaccggtcatcaccaatatttttaggccgtcgcccat 22885127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 41508809 - 41508666
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| | ||| ||||||    
T  41508809 acaaccacaatgtacatcaactacattcacaactaggactcatgccaaaacatgatatgatcctagacacacc-ctatatgcatgcgttgccggtctcac 41508711  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  41508710 caatatttaggccgtcgcccatgatgccgacagaacatcataatc 41508666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 18610785 - 18610856
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  18610785 tctagatgcatgcggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacataacatcataatc 18610856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 45476112 - 45476020
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccg 187  Q
    ||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  ||||||||| || | || |||||||||||||||    
T  45476112 acaaccacaagtatatcaattattttcacaattaggactcatgccacaatatgatatgcccctagacacgacacataaatgcatgcggtaccg 45476020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 20708244 - 20708385
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac-aactctatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| ||||| || |||||||| ||| |||||||||||||||||||||| |||||||||| |   ||| ||||||||||||| |   |||||||     
T  20708244 ccacaagtatatcaattattttcacaattagaactcatgccacaacatgatatgttcctagacacgatacctaaatgcatgcggtactgtcgtcaccaac 20708343  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||||||||  ||||||||||| | |||||| |||||||    
T  20708344 gtctaggccgtcaccccatgatgccaacagaacaccataatc 20708385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 16000622 - 16000753
Alignment:
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatctcaccaatatttaggccg 208  Q
    ||||| || |||||||| |||||||||||||||||| || |||| |||||||||| ||  ||| |||||||| |||||||  ||| |||| | |||||||    
T  16000622 atcaaatattttcacaattaggactcatgccacaacgtggtatgttcctagacacgacacctaaatgcatgccgtaccgacatcaacaatgtctaggccg 16000721  T
Q  209 tc-gcccatgatgccgatagaacatcataatc 239  Q
    ||  ||||||||||| |  |||||||| ||||    
T  16000722 tcaccccatgatgccaactgaacatcacaatc 16000753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 21233754 - 21233662
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccg 187  Q
    |||||| |||||| ||||| || ||||| || ||||||||||||||||| ||||||||  ||||||||  || | || |||||||||||||||    
T  21233754 acaaccgcaagtatatcaattattttcaaaattaggactcatgccacaatatgatatgcccctagacatgacacataaatgcatgcggtaccg 21233662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 16041182 - 16041133
Alignment:
Q  168 tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||| ||||||||||||||| || |||||||||||||||| |||||||||    
T  16041182 tctagatgcatgcggtaccggtcatcaccaatatttaggctgtcgcccat 16041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 16042858 - 16042809
Alignment:
Q  168 tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||| ||||||||||||||| || |||||||||||||||| |||||||||    
T  16042858 tctagatgcatgcggtaccggtcatcaccaatatttaggctgtcgcccat 16042809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 18263132 - 18262991
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| |||||  | |||||||| || |||||||||||||| ||||||||  ||||||||| || | || ||| |||||||||||   |||||||     
T  18263132 ccacaagtatatcaaccattttcacaattaagactcatgccacaatatgatatgtccctagacacgacacataaatgtatgcggtaccgtcgtcaccaac 18263033  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||||||||  ||||||||||| | ||| || |||||||    
T  18263032 gtctaggccgtcaccccatgatgccaacagagcaccataatc 18262991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 1609 - 1838
Alignment:
Q  11 catcatcatcaatattcgtcatttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtac 109  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1609 catcatcatcaatattcatcattcaaaaaattaatcataacatgacaccacaattcatcaaatacaaacatcaccaataatcacgtacaaccacaagtac 1708  T
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |    
T  1709 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacataactctatatgcatgcggtaccgatctcaccaatatttaggcttt 1808  T
Q  210 cgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||||||||||||||||||    
T  1809 cgcccatgatgccgatagaacatcataatc 1838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 47482660 - 47482431
Alignment:
Q  11 catcatcatcaatattcgtcatttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtac 109  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47482660 catcatcatcaatattcatcattcacgaaattaatcataacatgacaccacaattcatcaaatacaaacatcaccactaatcacgtacaaccacaagtac 47482561  T
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  47482560 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatacatgcggtaccgatctcaccaatatttaggttgt 47482461  T
Q  210 cgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||||||||||||||||||    
T  47482460 cgcccatgatgccgatagaacatcataatc 47482431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 48624095 - 48623873
Alignment:
Q  18 atcaatattcgtcatttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagt 116  Q
    |||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48624095 atcaatattcatcattcacaaaattaatcataacatgacacaacaattcatcaaatacaaacatcaccgttaatcacgtacaaccacaagtacatcaagt 48623996  T
Q  117 aatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| |||| ||||||||||||||||    
T  48623995 aatttcacaactaggactcatgccacaacatgatatgatcctagacatatctctatatgcatgcggtaccattctcactaataattaggccgtcgcccat 48623896  T
Q  217 gatgccgatagaacatcataatc 239  Q
    |||||||||||||||||||||||    
T  48623895 gatgccgatagaacatcataatc 48623873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 3048213 - 3048393
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    ||||||||||||||||| || | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3048213 aattaatcataacatgatacaacaatccatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 3048312  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  |||||||||||||||||||||||  |||||||||||||||||   || ||||||||||||||||||||||||||    
T  3048313 gtcacctcatgatatgatcctagacacaacacctatatgcatgcggtacatgtcatcaccaatatttaggccgtcgcccat 3048393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 13319783 - 13319961
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  13319783 ttaatcatgacatgacacgacaatccatcaaatacaaatatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgt 13319882  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  ||||||||||||||||||||||| | |||||||||| |||||||||| |||||||||||||||| ||| |||||    
T  13319883 cacctcatgatatgatcctagacacaacatatatatgcatgtggtaccgatcatcaccaatatttaggctgtcacccat 13319961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 25122770 - 25122898
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  25122770 acaaccacaatgtacatcaactacattcacaactacgactcatgccacaacatgatatgatcctagacacacc-ctatatgcatgcggtaccggtctcac 25122868  T
Q  195 caatatttaggccgtcgcccatgatgccga 224  Q
    |||||||||||||||||||| |||||||||    
T  25122869 caatatttaggccgtcgcccttgatgccga 25122898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 7286160 - 7286042
Alignment:
Q  120 ttcacaactaggactcatgccacaa-catgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatga 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| |||    
T  7286160 ttcacaactaggactcatgccacaatcatgatatgatcctagacacaactctatatgcatgcggtatcggtcacaccaata-ttaggccgtcgccc-tga 7286063  T
Q  219 tgccgatagaacatcataatc 239  Q
    |||||||||||||||||||||    
T  7286062 tgccgatagaacatcataatc 7286042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 14252979 - 14252908
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  14252979 tctagatgcatgcggtaccggtctcaccaatatttaggtcgtcgcccatgatgccgacagaacatcataatc 14252908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 9641498 - 9641639
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||  ||||||||| ||  ||| |||||||||||||||   |||||||     
T  9641498 ccacaagtatatcaattattttcacaattaggactcatgccacaacatggtatgtccctagacacgacacctaaatgcatgcggtaccgtcatcaccaac 9641597  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||||||||  ||||||| ||| | | ||||||||||||    
T  9641598 gtctaggccgtcaccccatgaggccaacataacatcataatc 9641639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 28388887 - 28389032
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcac 194  Q
    ||||| ||||||| ||||| || |||||||| |||||||||||||| || ||||||||  | ||||||| || | || |||||||||||||||   ||||    
T  28388887 acaactacaagtatatcaattattttcacaattaggactcatgccataatatgatatgcccatagacacgacacataaatgcatgcggtaccgtcgtcac 28388986  T
Q  195 caatatttaggccgtcg-cccatgatgccgatagaacatcataatc 239  Q
    |||  | |||||||||| ||||||||||| | |||||| |||||||    
T  28388987 caacgtctaggccgtcgccccatgatgccaacagaacaccataatc 28389032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 7527577 - 7527803
Alignment:
Q  14 catcatcaatattcgtcatttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatc 112  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||||| | |||||||| ||| ||||     
T  7527577 catcatcaatattcatcattcacaaaattaatcatagcatgacacaacaatccatcaaatacaaacatcaccattaatcgcttacaaccataagcacatt 7527676  T
Q  113 aagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgc 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7527677 aagtaatttcacaacaaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgc 7527776  T
Q  213 ccatgatgccgatagaacatcataatc 239  Q
    |||||||||||| ||||||||||||||    
T  7527777 ccatgatgccgacagaacatcataatc 7527803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 17908164 - 17908363
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  17908164 ttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaatcacaagtacatcaagtaatttcacaactaggactcatgc 17908263  T
Q  140 cacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17908264 cacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataatc 17908363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 23986028 - 23985874
Alignment:
Q  85 attaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggta 184  Q
    |||||||| | ||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23986028 attaatcatgcacaaccacaagtacatcgaatactctcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggta 23985929  T
Q  185 ccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||| ||| ||||||||||||||||||| |||||||||| || ||||| |||||||    
T  23985928 ccggtctgaccaatatttaggccgtcgtccatgatgccaattgaacaccataatc 23985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 32949594 - 32949772
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| || |||||| | ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  32949594 ttaatcatgacgtgacacaacaatccatcaaatacaaacatcaccataaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgt 32949693  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  |||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  32949694 cacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatatttaggccatcgcccat 32949772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 2030372 - 2030515
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||| ||||||    
T  2030372 acaaccacaatgtacatcaactacattcacaactaggactcatgccacaacatgatatgatcctagacacacca-tgtatgcatgcggtaccggtctcac 2030470  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  2030471 caatatttaggccgtcgcccctgatgccgacagaacatcataatc 2030515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 25003444 - 25003563
Alignment:
Q  120 ttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgat 219  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  ||||||  ||||    
T  25003444 ttcacaactaagactcattccacaacatgatatgatcctagacacaactctatatgcatgtggtaccggtctcaccaatatttaggttgtcgcctgtgat 25003543  T
Q  220 gccgatagaacatcataatc 239  Q
    ||| | ||||||||||||||    
T  25003544 gccaacagaacatcataatc 25003563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 34937976 - 34938047
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  34937976 tctagatgcatgcggtaccagtctcaccaatatttaggtcgtcgcccatgatgccgacagaacatcataatc 34938047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 23236126 - 23235985
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| ||||| || |||||||| ||| ||||||||||||||||| || | ||||||||| |||  ||| ||||||||||||||| | |||||||     
T  23236126 ccacaagtatatcaattattttcacaattagaactcatgccacaacatggtaagttcctagacataacacctaaatgcatgcggtaccgttgtcaccaac 23236027  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||||||||  ||||||||||| | |||||| |||||||    
T  23236026 gtctaggccgtcaccccatgatgccaacagaacaccataatc 23235985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 22254786 - 22254987
Alignment:
Q  40 attaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaattt-cacaactaggactcat 137  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22254786 attaatcataacatgacacaacaatccatcaaatacaaacatcaccatcaatcacgtacaaccacaagtacatcaagtaatttgcacaactaggactcat 22254885  T
Q  138 gccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22254886 gccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataa 22254985  T
Q  238 tc 239  Q
    ||    
T  22254986 tc 22254987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 28032811 - 28032583
Alignment:
Q  11 catcatcatcaatattcgtcatttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtac 109  Q
    ||||||||| |||| || ||||| ||||||||||||||||||| |||| | ||| ||||||| ||||||||||||||| ||||| |||| ||||||||||    
T  28032811 catcatcattaataatcatcattcacaaaattaatcataacataacacaacaatccatcaaacacaaacatcaccattcatcacttacatccacaagtac 28032712  T
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28032711 atcaagtaatt-cacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 28032613  T
Q  210 cgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||| | ||||||||||||    
T  28032612 cgcccatgatgccgacaaaacatcataatc 28032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 17203002 - 17203231
Alignment:
Q  11 catcatcatcaatattcgtcatttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtac 109  Q
    ||||||||| || | || ||||| ||||||||| |||||||||||||  | ||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  17203002 catcatcattaaaaatcatcattcacaaaattagtcataacatgacataacaatccatcaaatacaaacatcacctttaatcacttacaaccacaagtac 17203101  T
Q  110 atcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgt 209  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  17203102 atcaaataatttcacaactaggactcatgccacaacatgatatgatcctaaacacaactctatatgcatgcggtaccgatctcaccaatattcaggtcgt 17203201  T
Q  210 cgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||| ||||||||||||||    
T  17203202 cgcccatgatgccgacagaacatcataatc 17203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 25254993 - 25254853
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  25254993 ttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgt 25254894  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatg 179  Q
    |||  |||||||||||||||||||||||  |||||||||||    
T  25254893 cacctcatgatatgatcctagacacaacacctatatgcatg 25254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 23779574 - 23779422
Alignment:
Q  68 caaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaattt-cacaactaggactcatgccacaacatgatatgatcctagacacaa 166  Q
    |||||||||||||||||| || |||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||    
T  23779574 caaatacaaacatcaccactactcacttacaaccacaagttcatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctagacacaa 23779475  T
Q  167 c-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    |  ||||||||||||||||||| || ||||||||| |||||||||||||||||    
T  23779474 caactatatgcatgcggtaccgttcatcaccaatattttaggccgtcgcccat 23779422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 239
Target Start/End: Original strand, 32464398 - 32464570
Alignment:
Q  66 atcaaatacaaacatcaccattaatcacgtacaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    |||||||| || |||||| |||||| |   |||||||||| | ||||||| ||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  32464398 atcaaatataatcatcacaattaattattcacaaccacaatgcacatcaaatacattcacaactaggactcatgtcacaacatgatatgatcctagacac 32464497  T
Q  165 aactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||| ||||||  || |||||||| |||||  ||||||| ||||||||| ||||||||||||||    
T  32464498 aactctatatgcatgtggtaccagtcacaccaata-ttaggttgtcgccc-tgatgccgacagaacatcataatc 32464570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 42180045 - 42179974
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  42180045 tctagatgcatgcggtaccggtctcaccaatatttaggtcgtcacccatgatgccgacagaacatcataatc 42179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 16294483 - 16294321
Alignment:
Q  79 atcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgca 177  Q
    ||||| || ||||||  ||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  ||||||||| || | || |||||    
T  16294483 atcacaatcaatcactcacaaccacaagtatatcaattattttcacaattaggactcatgccacaatatgatatgcccctagacacgacacataaatgca 16294384  T
Q  178 tgcggtaccgatctcaccaatatttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||   |||||||  | |||||||||  ||||||||||| | |||||| |||||||    
T  16294383 tgcggtaccgtcgtcaccaacgtctaggccgtcaccccatgatgccaacagaacaccataatc 16294321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 7513671 - 7513621
Alignment:
Q  189 tctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7513671 tctcaccaatatttaggctgtcgcccatgatgccgacagaacatcataatc 7513621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 9819 - 9620
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  9819 ttaatcataacataacacaacaatccatcaaatacaaacatcaccatcaatcacttccaaccacaagtacatcaagtaatttcacaactaggactcatgc 9720  T
Q  140 cacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| || ||||||||||||||    
T  9719 cacaacatgatatgatcctagacacaactctatatgcatgcggttccgatctcaccaataattaggctgtcgcccatgatgctgacagaacatcataatc 9620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 16301755 - 16301584
Alignment:
Q  65 catcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16301755 catcaaacacaaacatcaccattaatcacttacaaccacaagtaaatcaagta-tttcacaactaggactcatgccacaacatgatatgatcctagacac 16301657  T
Q  165 aactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataat 238  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16301656 aactctatatgcatgcggta-ctatctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataat 16301584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 32278297 - 32278117
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32278297 aattaatcataacatgacacaacaatccatcaaatataaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 32278198  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  ||  |||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  32278197 gtcacctcaaaatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 32278117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 29664727 - 29664880
Alignment:
Q  65 catcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  29664727 catcaaacacaaacatcaccattaatcacttacaaccacacgtacatcaagtaatttcacaactaggactcatgtcacctcatgatatgatcctagacac 29664826  T
Q  165 aac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
     ||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  29664827 gacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 29664880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 14150999 - 14151165
Alignment:
Q  74 caaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctat 172  Q
    |||| ||||| |||||||||  ||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| ||  ||||    
T  14150999 caaatatcacaattaatcactcacaaccataagcacatcaaatattttcacaactagcactcatgccacaacatgatatgatcctagacacgacacctat 14151098  T
Q  173 atgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||| ||||    
T  14151099 atgcatgcggtaccggtctcaccaatatttaggtcgtcgcccatgatgccgacaaaacatcaaaatc 14151165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 27739537 - 27739701
Alignment:
Q  78 catcaccattaatcacgtacaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaa-catgatatgatcctagacacaactctatatg 175  Q
    |||||| |||||||| | |||||||| | ||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |    
T  27739537 catcacaattaatcatgcacaaccaccacgtacatcaactacattcacaactaggactcatgccacaatcatgatatgatcctagacacgacactatagg 27739636  T
Q  176 catgcggtaccgatc-tcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||| || || || |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  27739637 catgcgatatcggtcatcaccaatatttaggccgtcgcccatgatgccaacagaacatcataatc 27739701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 19627855 - 19627926
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19627855 tctagatgcatgcggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataatc 19627926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 31469261 - 31469116
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcac 194  Q
    ||||||||||||| ||||| || || ||||| ||||||||||||||||| ||||||||  ||||||||| || | || |||||||||||||||   ||||    
T  31469261 acaaccacaagtatatcaattatttccacaattaggactcatgccacaatatgatatgtccctagacacgacacataaatgcatgcggtaccgtcgtcac 31469162  T
Q  195 caatatttaggccgtcgccc-atgatgccgatagaacatcataatc 239  Q
    |||  | ||||||||| ||| |||||||| | |||||| |||||||    
T  31469161 caacgtctaggccgtcaccctatgatgccaacagaacaccataatc 31469116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 19670935 - 19671076
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  ||||||||| || | || |||||||||||||||   |||||||     
T  19670935 ccacaagtatatcaattattttcacaattaggactcatgccacaatatgatatgtccctagacacgacacataaatgcatgcggtaccgtcgtcaccaac 19671034  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||| ||||  ||||||||||| | |||||| |||||||    
T  19671035 gtctaggtcgtcaccccatgatgccaacagaacaccataatc 19671076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 35010930 - 35010882
Alignment:
Q  191 tcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  35010930 tcaccaatatttaggccgtcgcccatgatgtcgacagaacatcataatc 35010882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 26523790 - 26523725
Alignment:
Q  123 acaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccg 187  Q
    |||||||||||||||||||||||||  |||| |||||||||| |||| || |||||||||||||||    
T  26523790 acaactaggactcatgccacaacatactatgttcctagacacgactcttacatgcatgcggtaccg 26523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 29960 - 30161
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  29960 ttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgt 30059  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccatgatgccgatagaacatcataa 237  Q
    |||  |||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||    
T  30060 cacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatttaggccgtcgcccatgatgccgacaaaacatcataa 30159  T
Q  238 tc 239  Q
    ||    
T  30160 tc 30161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 9304422 - 9304221
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    ||||||||||||||| || | ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  9304422 ttaatcataacatgatacaacaatccatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgt 9304323  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccatgatgccgatagaacatcataa 237  Q
    |||  |||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  9304322 cacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgttcatcaccaatatttaggccgtcgcccatgatgccgacagaacatcataa 9304223  T
Q  238 tc 239  Q
    ||    
T  9304222 tc 9304221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 14283791 - 14283971
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14283791 aattaatcataacatgacacaacaatccatcaagtacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 14283890  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  |||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  14283891 gtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 14283971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 239
Target Start/End: Complemental strand, 12903556 - 12903353
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaattt-cacaactaggactca 136  Q
    |||||||||||||||| ||| | ||  || ||||| |||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||| ||||    
T  12903556 aattaatcataacatggcacaacaacccaacaaatgcaaacatcactattaatcacttacaaccacaagaacatcaagtaatttgcacaactaggtctca 12903457  T
Q  137 tgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcat 235  Q
    ||||||  ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  12903456 tgccacctcatgatatgatcctagacacaacacctatatgcatgcggtaccgatctcaccaatatttaggccatcgcccatgatgccgacagaacatcat 12903357  T
Q  236 aatc 239  Q
    ||||    
T  12903356 aatc 12903353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 23887866 - 23887686
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23887866 aattaatcataacatgacacaacaatccatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 23887767  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  |||||||||||| ||||||||||  ||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23887766 gtcacctcatgatatgatcatagacacaacacctatatgtatgcggtaccggtcatcaccaatatttaggccgtcgcccat 23887686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 38166532 - 38166712
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38166532 aattaatcataacatgacacaacaatacatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 38166631  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  ||||||||||||||||||||| |  |||||||||||||| |||| || ||||||||||||||||||||||||||    
T  38166632 gtcacctcatgatatgatcctagacacagcacctatatgcatgcggcaccggtcatcaccaatatttaggccgtcgcccat 38166712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 11987843 - 11987665
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       
T  11987843 ttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcaatt 11987744  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  |||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  11987743 cacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 11987665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 17936729 - 17936908
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaa-tttcacaactaggactcatg 138  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  17936729 ttaatcataacatgacacaacaatccatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaattttcacaactaggactcatg 17936828  T
Q  139 ccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
     |||  |||||||||||||||||||||||  ||||||||||||||| ||| || ||||||||||||||||||||||||||    
T  17936829 tcacctcatgatatgatcctagacacaacacctatatgcatgcggttccgttcatcaccaatatttaggccgtcgcccat 17936908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 51962847 - 51962704
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  51962847 acaaccacaatgtacatcaactacattcacaactaggactcatgccacaacatgatatgatcctagacacacc-ctatatgcatgcggtaccggtctcac 51962749  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||    
T  51962748 caatatttagcccgtcgcccttgatgccgacagaacatcataatc 51962704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 11480759 - 11480578
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||| ||||||| | ||| |||||| |  |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11480759 aattaatcataatatgacacaacaatccatcaagtgtaaacatcaccatcaatcatttacaaccacaagtacatcaagtaatttcacaactaggactcat 11480660  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    | |||   ||||||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||||||||||||    
T  11480659 gtcaccttatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatattttaggccgtcgcccat 11480578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 18738353 - 18738474
Alignment:
Q  120 ttcacaactaggactcatgccacaa-catgatatgatcctagacacaactctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccatg 217  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  18738353 ttcacaactaggactcatgccacaatcatgttatgatcctagacacgacactatatgcatgcggtactgatcatcaccaatatttaggccgtcgcccatg 18738452  T
Q  218 atgccgatagaacatcataatc 239  Q
    ||||||| ||||||||||||||    
T  18738453 atgccgacagaacatcataatc 18738474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 54040223 - 54040152
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54040223 tctagatgcatgtggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataatc 54040152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 54049510 - 54049439
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54049510 tctagatgcatgtggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataatc 54049439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 11636956 - 11637101
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcac 194  Q
    ||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  ||||||||| || | || |||||||| ||||||   ||||    
T  11636956 acaaccacaagtatatcaattattttcacaattaggactcatgccacaatatgatatgcccctagacacgacacataaatgcatgcagtaccgtcatcac 11637055  T
Q  195 caatatttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
    |||  | |||||||||  ||||||||||| | | |||| |||||||    
T  11637056 caacgtctaggccgtcaccccatgatgccaacataacaccataatc 11637101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 16432 - 16612
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  16432 aattaatcataacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcgt 16531  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||    
T  16532 gtcacctcatgatatgatcctagacacaacatctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 16612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 166107 - 165948
Alignment:
Q  79 atcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcat 178  Q
    ||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  166107 atcaccattaatcacttacaaccataagaacatcaagtaattttacaactaggactcatgccacaacatgatatgatcctagacacaaccctatatgcat 166008  T
Q  179 gcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  166007 gcggtaccgatctcacc-atatttaggccgtagcccatgatgccgacagaacatcataatc 165948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 7742 - 7569
Alignment:
Q  68 caaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaattt-cacaactaggactcatgccacaacatgatatgatcctagacacaa 166  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||| ||||||    
T  7742 caaatgcaaacatcaccattaatcacttacatccacaagtacatcaagtaatttgcacaactaggactcatgtcacctcatgatatgatcctatacacaa 7643  T
Q  167 ctc-tatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7642 cacctatatgcatgcggtaccgatctcaccaatatttaggccgccgcccatgatgccgatagaacatcataatc 7569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 2349 - 2169
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    ||||||||||||||||| || | ||| ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2349 aattaatcataacatgatacaacaatccatcaaatataaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcat 2250  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    | |||  |||||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||| |||||||||||    
T  2249 gtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatatttagaccgtcgcccat 2169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 44551 - 44729
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||     
T  44551 ttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaatcacaagtacatcaagtaatttcacaactagaactcatgt 44650  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  |||||||||||||||||||| ||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  44651 cacctcatgatatgatcctagacacgacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 44729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 52747 - 52925
Alignment:
Q  41 ttaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||     
T  52747 ttaatcatgacatgacacaacaatccatcaaatacaaacatcaccattaatcacttacaatcacaagtacattaagtaatttcacaactaggactcatgt 52846  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  |||||||||||||||||||| ||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  52847 cacctcatgatatgatcctagacacgacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 52925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 17734 - 17886
Alignment:
Q  65 catcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  17734 catcaaatacaa-catcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgtcacctcatgatatgatcctagacac 17832  T
Q  165 aac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  17833 aacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 17886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 9717 - 9574
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  9717 acaaccacaatgtacatcaactacattcacaactaggactcatgccataacatgatatgatcctagacacacc-ctatatgcatgcggtaccggtctcac 9619  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  9618 caatatttaggccgtcgcccctgatgccgatagaacatcataatc 9574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 15125 - 14944
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  15125 aattaatcataacatgacacaacaatccatcaaatacaaacatcaccatcaatcacttacaaccacaagtacatcaagtaatttcacaattaggactcat 15026  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    | |||   ||||||||||||||||||||||  ||| ||||||||||||||| || ||||||||| |||||||||||||||||    
T  15025 gtcaccttatgatatgatcctagacacaacacctacatgcatgcggtaccggtcatcaccaatattttaggccgtcgcccat 14944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 67360 - 67179
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  67360 aattaatcataacatgacacaacaatccattaaatacaaacatcaccattaatcacttacaaccacaagtacatcaagtaatttcacaactgggactcat 67261  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    | |||   ||||||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||| ||||||||||    
T  67260 gtcaccttatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatattttaggtcgtcgcccat 67179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 9793809 - 9793990
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  9793809 aattaatcataacatgacacaacaatccatcaaatacaaacatcaccatcaatcacttacaaccacgagtacatcaagtaatttcacaactaggactcat 9793908  T
Q  138 gccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    | |||   ||||||||||||||||||||||  ||| ||||||||||||||| || ||||||||| |||||||||||||||||    
T  9793909 gtcaccttatgatatgatcctagacacaacacctacatgcatgcggtaccggtcatcaccaatattttaggccgtcgcccat 9793990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 32462185 - 32462032
Alignment:
Q  65 catcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||    
T  32462185 catcaaatacaaacatcatcattaatcacttacaaccacaagtacatcaagtaatttcacaactaggactcatgtcacctcatgatatgatcctggacac 32462086  T
Q  165 aac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  |||||||||||| |||||| || ||||||||||||||||||||||||||    
T  32462085 aacacctatatgcatgcagtaccggtcatcaccaatatttaggccgtcgcccat 32462032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 22736983 - 22737161
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcat 137  Q
    ||||||||||||||||| || | ||| |||  ||| ||||||||||||| |||||   |||| |||||| | | ||||||||||||||||||||||||||    
T  22736983 aattaatcataacatgatacaacaatccattgaatgcaaacatcaccatgaatcattcacaatcacaagcataacaagtaatttcacaactaggactcat 22737082  T
Q  138 gccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccat 216  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  22737083 gccacatcatgatatgatcctagacaccactctatatgcatgcggtaccggtctcaccaatatttaggccatcgcccat 22737161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 23271828 - 23271675
Alignment:
Q  65 catcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    |||||||||||| ||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  23271828 catcaaatacaagcatcaccattaatcactcacaatcacaagtacatcaattaatttcacaactaggactcatgtcacctcatgatatgatcctagacac 23271729  T
Q  165 aac-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  23271728 aacacctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 23271675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 55378466 - 55378348
Alignment:
Q  120 ttcacaactaggactcatgccacaa-catgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatga 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||    
T  55378466 ttcacaactaggactcatgccacaatcatgatatgatcctagacacaactctatatgcatgcggtaccggtcacaccaata-ttaggccgtcgccc-tga 55378369  T
Q  219 tgccgatagaacatcataatc 239  Q
    |||||| ||||||||||||||    
T  55378368 tgccgacagaacatcataatc 55378348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 8043531 - 8043682
Alignment:
Q  68 caaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaa-tttcacaactaggactcatgccacaacatgatatgatcctagacacaa 166  Q
    ||||||||||||||||||| |||||  |||||||||||| ||||||| ||| |||||||||||||||||||| |||  ||||||||||||||||||| ||    
T  8043531 caaatacaaacatcaccatcaatcatttacaaccacaagcacatcaattaattttcacaactaggactcatgtcacctcatgatatgatcctagacataa 8043630  T
Q  167 c-tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    |  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  8043631 cacctatatgcatgcggtaccgttcatcaccaatatttaggccgtcgcccat 8043682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 14503219 - 14503083
Alignment:
Q  83 ccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcg 181  Q
    |||| |||||| |||||||||||||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||||  |||||||||||||    
T  14503219 ccatcaatcacttacaaccacaagtacatcaagtaatttcacagttaggactcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcg 14503120  T
Q  182 gtaccgatc-tcaccaat-atttaggccgtcgcccat 216  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  14503119 gtaccgatcatcaccaataatttaggccgtcgcccat 14503083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 19699249 - 19699178
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  19699249 tctagatgcatgcggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacataacatcataatc 19699178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 19709834 - 19709763
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  19709834 tctagatgcatgcggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacataacatcataatc 19709763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 13448758 - 13448617
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| ||| | || |||||||||||||||||||||||||| ||||||||  ||||||||  || | || |||||||||||||||   |||||||     
T  13448758 ccacaagtatatccattattttcacaactaggactcatgccacaatatgatatgtccctagacatgacgcataaatgcatgcggtaccgtcgtcaccaac 13448659  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||||||||  ||||||||||| | ||||||||||||||    
T  13448658 gtctaggccgtcaccccatgatgccaacagaacatcataatc 13448617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 13595747 - 13595606
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||  ||||||||| ||  ||| |||||||||||||||   |||||||     
T  13595747 ccacaagtatatcaattattttcacaattaggactcatgccacaacatggtatgtccctagacacgacacctaaatgcatgcggtaccgtcatcaccaac 13595648  T
Q  199 atttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
     | |||||||||  ||||||| ||| | | ||||||||||||    
T  13595647 gtctaggccgtcaccccatgaggccaacataacatcataatc 13595606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 7848885 - 7848951
Alignment:
Q  170 tatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcata 236  Q
    |||||||||| ||||||  ||||||||||| |||||  ||||||  ||||||||| |||||||||||    
T  7848885 tatatgcatgtggtaccagtctcaccaataattaggttgtcgcctttgatgccgacagaacatcata 7848951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 171 - 28
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||| ||||||    
T  171 acaaccacaatgtacatcaactacattcacaactaggactcatgccacaacatgatatgatcctagacacacca-tgtatgcatgcggtaccggtctcac 73  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||    
T  72 caatatttaggtcgtcgcccttgatgccgacagaacatcataatc 28  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 7640 - 7508
Alignment:
Q  106 gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttagg 205  Q
    ||||||||| ||  ||||||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  7640 gtacatcaactacattcacaactaggactcatgccattacatgatatgatcctagacacacc-ctatatgcatgcggtaccggtctcaccaatatttagg 7542  T
Q  206 ccgtcgcccatgatgccgatagaacatcataatc 239  Q
     |||||||| ||||||||| ||||||||||||||    
T  7541 tcgtcgcccttgatgccgacagaacatcataatc 7508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 12352 - 12495
Alignment:
Q  96 acaaccacaa-gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcac 194  Q
    |||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  12352 acaaccacaatgtacatcaactacattcacaactaggactcatgccacaacatgatatgatcctagacac-accctatatgcatgcggtaccggtctcac 12450  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||   ||||||||||||||||| | ||||||||||||    
T  12451 caatatttagaaagtcgcccatgatgccgaaaaaacatcataatc 12495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 58206 - 58027
Alignment:
Q  41 ttaatcataacatgacac-caaattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||| |||||||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||     
T  58206 ttaatcatgacatgacacaccaatccatcatatacaaacattaccattaatcacttacaactacaagtacattaagtaatttcacaactaggactcatgt 58107  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    |||  |||||||||||||||||||| ||  ||| ||||||||||||||| || ||||||||| |||||||||||||||||    
T  58106 cacctcatgatatgatcctagacacgacacctacatgcatgcggtaccggtcatcaccaatattttaggccgtcgcccat 58027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 167843 - 167711
Alignment:
Q  106 gtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactctatatgcatgcggtaccgatctcaccaatatttagg 205  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||     
T  167843 gtacatcaactacattcacaactaggactcatgccacaacatgatatgatcctagacac-accctatatgcatgcggtaccggtctcaccaatatttagt 167745  T
Q  206 ccgtcgcccatgatgccgatagaacatcataatc 239  Q
     |||| ||| ||||||||| ||||||||||||||    
T  167744 tcgtctcccttgatgccgacagaacatcataatc 167711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1486 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1486
Description:

Target: scaffold1486; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 1422 - 1601
Alignment:
Q  41 ttaatcataacatgacac-caaattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgc 139  Q
    |||||||| ||||||||| | ||| ||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||     
T  1422 ttaatcatgacatgacacaccaatccatcatatacaaacatcaccattaatcacttacaactacaagtacattaagtaatttcacaactaggactcatgt 1521  T
Q  140 cacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
    |||  |||||||||||| ||||||| ||  ||| ||||||||||||||| || ||||||||| ||||| |||||||||||    
T  1522 cacctcatgatatgatcatagacacgacacctaaatgcatgcggtaccggtcatcaccaatattttagaccgtcgcccat 1601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 3930 - 4094
Alignment:
Q  40 attaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatg 138  Q
    ||||||||||||||||||  | ||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3930 attaatcataacatgacataacaatccattaaatacgaacatcaccatcaatcacgtacaaccacaagtacatcaagtaa-ttcacaactaggactcatg 4028  T
Q  139 ccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaatattt 202  Q
     |||  |||||||||||| ||||||||||  |||||| ||||||||| || || ||||||||||||    
T  4029 tcacctcatgatatgatcatagacacaacacctatatacatgcggtatcggtcatcaccaatattt 4094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 35507 - 35321
Alignment:
Q  31 atttacaaaattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaacta 129  Q
    ||||||| ||||| ||||||||||| || | ||| |||||||||||||||||||||| |||||  ||||| |||||||||||||||||| ||| |||||     
T  35507 atttacataattactcataacatgatacaacaatccatcaaatacaaacatcaccatgaatcatttacaatcacaagtacatcaagtaaattcccaact- 35409  T
Q  130 ggactcatgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccgatc-tcaccaata-tttaggccgtcgcccat 216  Q
      ||||||| |||  |||||||||||||||||||||||  ||||||||||||||||||| || ||||||||| ||||||| |||||||||    
T  35408 --actcatgtcacctcatgatatgatcctagacacaacacctatatgcatgcggtaccggtcatcaccaatattttaggctgtcgcccat 35321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1666 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold1666
Description:

Target: scaffold1666; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 1251 - 1100
Alignment:
Q  39 aattaatcataacatgacacca-aattcatcaaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaa-tttcacaactaggactca 136  Q
    |||||||||||||||| ||| | ||| || ||||||| ||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||| |||||    
T  1251 aattaatcataacatggcacaacaatccaacaaatactaacatcaccatcaatcacttacaaccacaagtacatcacgtaattttcacaactagaactca 1152  T
Q  137 tgccacaacatgatatgatcctagacacaac-tctatatgcatgcggtaccg 187  Q
    || |||  |||||||||||| ||||||||||  |||||||||||||||||||    
T  1151 tgtcacctcatgatatgatcatagacacaacacctatatgcatgcggtaccg 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 26831 - 26902
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26831 tctagatgcatgcggtaccggtctcaccaatatttaggccgtcgcccatgatgccgacagaacatcataatc 26902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 27846 - 27917
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  27846 tctagatgcatgcggtaccggtctcatcaatatttaggccgtcgcccataatgccgacagaacatcataatc 27917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 39842 - 39913
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  39842 tctagatgcatgcggtaccggtctcatcaatatttaggccgtcgcccataatgccgacagaacatcataatc 39913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 2426 - 2489
Alignment:
Q  176 catgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2426 catgcggtaccaatctcaccaataattaggccgtcgcccatgatgccgatagaacatcataatc 2489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 23393 - 23464
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  23393 tctagatgcatgcggtaccggtctcacaaatatttaggccgtcgcccatgatgccgacagaacatcataatc 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 20252723 - 20252794
Alignment:
Q  168 tctatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  20252723 tctagatgcatgcggtaccggtctcaccaatatttaggccgtcacccatgatgccgacagaacatcataatc 20252794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 18164597 - 18164712
Alignment:
Q  69 aaatacaaacatcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaact 168  Q
    |||| |||| ||||| || ||||||  ||| |||||||||  |||| || |||||||  ||||||||||||||||| ||||||||  ||| ||||||||     
T  18164597 aaattcaaatatcacaatcaatcactcacatccacaagtatgtcaatta-tttcacatttaggactcatgccacaatatgatatgtccctcgacacaaca 18164695  T
Q  169 c-tatatgcatgcggta 184  Q
    | || ||||||||||||    
T  18164696 cataaatgcatgcggta 18164712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 331 - 259
Alignment:
Q  168 tctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  331 tctagatgcatgcggtaccgttcatcaccaatatttaggtcgtcgcccatgatgccgatagaacatcataatc 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 4505 - 4343
Alignment:
Q  79 atcaccattaatcacgtacaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaac-tctatatgca 177  Q
    ||||| || ||||||  ||| ||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||  ||||||||| ||  ||| |||||    
T  4505 atcacaatcaatcactcacatccacaagtatatcaattattttcacaattaggactcatgccacaacatggtatgtccctagacaccacacctaaatgca 4406  T
Q  178 tgcggtaccgatctcaccaatatttaggccgtc-gcccatgatgccgatagaacatcataatc 239  Q
    |||||||||| | |||||||  | |||||||||  ||||||||| | | ||||||||||||||    
T  4405 tgcggtaccgttgtcaccaacgtctaggccgtcaccccatgatgtcaacagaacatcataatc 4343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 28553 - 28698
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcac 194  Q
    ||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  ||||||||| || | || ||||||| |||||||   ||||    
T  28553 acaaccacaagtatatcaactattttcacaattaggactcatgccacaatatgatatggccctagacacgacacataaatgcatgtggtaccgtcgtcac 28652  T
Q  195 caatatttaggccgtcgccc-atgatgccgatagaacatcataatc 239  Q
    |||  | ||||||||| ||| |||||||| | |||||| |||||||    
T  28653 caacgtctaggccgtcacccgatgatgccaacagaacaccataatc 28698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 20569 - 20661
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccg 187  Q
    |||| |||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  |||| |||| || | || |||||||||||||||    
T  20569 acaatcacaagtatatcaattattttcacaattaggactcatgccacaatatgatatgcccctatacacgacacataaatgcatgcggtaccg 20661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 98683 - 98563
Alignment:
Q  120 ttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcaccaatatttaggccgtcgcccatga 218  Q
    ||||||| ||||| ||||||||||||||| |||| || ||||||| || | || ||||||| ||||||||  |||||||  | ||||||||| |||||||    
T  98683 ttcacaattaggagtcatgccacaacatggtatgttcttagacacgacacctaaatgcatgtggtaccgacatcaccaacgtctaggccgtcacccatga 98584  T
Q  219 tgccgatagaacatcataatc 239  Q
    |||| | ||||||||||||||    
T  98583 tgccaacagaacatcataatc 98563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 104398 - 104541
Alignment:
Q  96 acaaccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcac 194  Q
    |||||||||||||  |||| || |||||||  ||||||||||||||||| ||||||||  ||||||||| || | || |||||||||||||||   ||||    
T  104398 acaaccacaagtatgtcaatta-tttcacatttaggactcatgccacaatatgatatgtccctagacacgacacataaatgcatgcggtaccgtcgtcac 104496  T
Q  195 caatatttaggccgtcgcccatgatgccgatagaacatcataatc 239  Q
    |||  | |||| |||| ||||||||||| | |||||| |||||||    
T  104497 caacgtctaggtcgtcacccatgatgccaacagaacaccataatc 104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 3427 - 3286
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacacaactc-tatatgcatgcggtaccgatctcaccaat 198  Q
    ||||||| | ||||| || |||||||| |||||||||||| |||| ||||||||  ||||||||| || | || || ||||||||||||   |||||||     
T  3427 ccacaagcatatcaattattttcacaattaggactcatgctacaatatgatatgcccctagacacgacacataaattcatgcggtaccgtcatcaccaac 3328  T
Q  199 atttaggccgtcg-cccatgatgccgatagaacatcataatc 239  Q
     | |||||||||| ||||||||||| | |||||| |||||||    
T  3327 gtctaggccgtcgccccatgatgccaacagaacaccataatc 3286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 35794 - 35746
Alignment:
Q  169 ctatatgcatgcggtaccgatc-tcaccaatatttaggccgtcgcccat 216  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  35794 ctatatgcatgcggtaccggtcatcaccaatatttaggccgtcgcccat 35746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 8740 - 8803
Alignment:
Q  123 acaactaggactcatgccacaacatgatatgatcctagacacaact-ctatatgcatgcggtac 185  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||| ||| ||||||| |||||    
T  8740 acaactaggactcatgccacaacatgttatgttcctagacacgactcctacatgcatgtggtac 8803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 36352 - 36416
Alignment:
Q  100 ccacaagtacatcaagtaatttcacaactaggactcatgccacaacatgatatgatcctagacac 164  Q
    ||||||||| ||||| || ||||| || || |||||||||||||| ||||||||  |||||||||    
T  36352 ccacaagtatatcaattattttcaaaattatgactcatgccacaatatgatatgtccctagacac 36416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University