View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16358_low_2 (Length: 346)

Name: NF16358_low_2
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16358_low_2
NF16358_low_2
[»] chr8 (3 HSPs)
chr8 (184-312)||(41714455-41714583)
chr8 (1-58)||(41715433-41715490)
chr8 (93-156)||(41715373-41715436)
[»] chr5 (1 HSPs)
chr5 (310-346)||(20501743-20501779)
[»] chr4 (2 HSPs)
chr4 (241-280)||(49459523-49459562)
chr4 (312-346)||(9369200-9369234)
[»] chr1 (1 HSPs)
chr1 (311-346)||(47913636-47913671)
[»] chr3 (3 HSPs)
chr3 (312-346)||(14171215-14171249)
chr3 (312-346)||(16982667-16982701)
chr3 (312-346)||(48763561-48763595)
[»] chr2 (1 HSPs)
chr2 (312-346)||(12444880-12444914)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 41714583 - 41714455
Alignment:
Q  184 agaaagaaataatttaaagcaactttagtgtatgatgcattatgttcaatctttttaatagatgatgacaactatagaaaacttatattggagtaagcac 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41714583 agaaagaaataatttaaagcaactttagtgtatgatgcattatgttcaatctttttaatagatgatgacaacgatagaaaacttatattggagtaagcac 41714484  T
Q  284 aaagatgaactaaaactttttatgaatca 312  Q
    |||||||||||||||||||||||| ||||    
T  41714483 aaagatgaactaaaactttttatgcatca 41714455  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41715490 - 41715433
Alignment:
Q  1 tttaggaaaataaagaattgcaaatattttatttcaagccatactaaagtaacagtta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41715490 tttaggaaaataaagaattgcaaatattttatttcaagccatactaaagtaacagtta 41715433  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 41715436 - 41715373
Alignment:
Q  93 gttatgtttattttaatttgacccctgtaaaattaaaattttcgttttagcaacttaaattttt 156  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||    
T  41715436 gttatgtttattttaatttgacccctgtaaaattaaaaatttccttttagcaattttaattttt 41715373  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 20501743 - 20501779
Alignment:
Q  310 tcactatattgatgacccgtgcgccgcacgggtctta 346  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20501743 tcactagattgatgacccgtgcgccgcacgggtctta 20501779  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 49459523 - 49459562
Alignment:
Q  241 atagatgatgacaactatagaaaacttatattggagtaag 280  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  49459523 atagatgatgacaactatagaaaacttgcattggagtaag 49459562  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 9369234 - 9369200
Alignment:
Q  312 actatattgatgacccgtgcgccgcacgggtctta 346  Q
    |||| ||||||||||||||||||||||||||||||    
T  9369234 actagattgatgacccgtgcgccgcacgggtctta 9369200  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 47913636 - 47913671
Alignment:
Q  311 cactatattgatgacccgtgcgccgcacgggtctta 346  Q
    ||||| ||||||||||||||||||||||||||||||    
T  47913636 cactagattgatgacccgtgcgccgcacgggtctta 47913671  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 14171215 - 14171249
Alignment:
Q  312 actatattgatgacccgtgcgccgcacgggtctta 346  Q
    |||| ||||||||||||||||||||||||||||||    
T  14171215 actagattgatgacccgtgcgccgcacgggtctta 14171249  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 16982701 - 16982667
Alignment:
Q  312 actatattgatgacccgtgcgccgcacgggtctta 346  Q
    |||| ||||||||||||||||||||||||||||||    
T  16982701 actagattgatgacccgtgcgccgcacgggtctta 16982667  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 48763595 - 48763561
Alignment:
Q  312 actatattgatgacccgtgcgccgcacgggtctta 346  Q
    |||| ||||||||||||||||||||||||||||||    
T  48763595 actagattgatgacccgtgcgccgcacgggtctta 48763561  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 12444880 - 12444914
Alignment:
Q  312 actatattgatgacccgtgcgccgcacgggtctta 346  Q
    |||| ||||||||||||||||||||||||||||||    
T  12444880 actagattgatgacccgtgcgccgcacgggtctta 12444914  T

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