View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16358_low_3 (Length: 320)
Name: NF16358_low_3
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16358_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 48543543 - 48543278
Alignment:
| Q |
37 |
cttaaaaatggaaacaggtggagttgatagtagtatattttcattgactatgatggaagaggctgaacatcatcaccatcagttttcttcaatctcaaag |
136 |
Q |
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| T |
48543543 |
cttaaaaatggaaacaggtggagttgatagtagtatattgtcattgactatgatggaagaggctgaacatcatcaccatcagttttcttcaatctcaaag |
48543444 |
T |
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| Q |
137 |
ctactcaacaattctcccaccactaccggtgtccatgatcttcttgaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttgttatc |
236 |
Q |
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| T |
48543443 |
ctactcaacaatgctcccaccactaccagtgtccatgatcttcttgaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttgttatc |
48543344 |
T |
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| Q |
237 |
tgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttc |
302 |
Q |
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| T |
48543343 |
tgaatatcatccatgtatgttgcaagtctatgtttagataattactgctatctttttacggttttc |
48543278 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 9834165 - 9834231
Alignment:
| Q |
165 |
gtgtccatgatcttcttgaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
231 |
Q |
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| T |
9834165 |
gtgttcatgagcttcttgaatgtcctgtttgtactaattcaatgtaccctccaattcatcaggtttg |
9834231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 733059 - 733108
Alignment:
| Q |
182 |
gaatgtccggtttgcaccaattcaatgtaccctccaatccatcaggtttg |
231 |
Q |
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| T |
733059 |
gaatgtcctgtttgtaccaattcaatgtatcctccaattcatcaggtttg |
733108 |
T |
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