View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16358_low_4 (Length: 310)
Name: NF16358_low_4
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16358_low_4 |
 | |
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| [»] scaffold0109 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
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| [»] scaffold0483 (1 HSPs) |
| | |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 6766234 - 6766063
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaa- |
99 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6766234 |
tccgatatgggatcaatgaaaactaacagccaatgtgcactacacaaatgtcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
6766135 |
T |
|
| Q |
100 |
aaaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6766134 |
aaaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
6766063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 6788643 - 6788493
Alignment:
| Q |
21 |
aactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaaaaataatcaaaaacaaagtt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
6788643 |
aactaacagccaatgtgcactacacaaatgtcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaaaaataatcaaaagcaaagtt |
6788544 |
T |
|
| Q |
121 |
tcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6788543 |
tcaaggaaaatcttacataggcttatgtacataaaatggtagaataaataa |
6788493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 30867446 - 30867276
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||| ||| |||||| |
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|
| T |
30867446 |
tccgatatgggattaatgacaaataacacccaatgtccactacacagatgtcaaagttaattagaaaatcttctataaacgatggtaaaaagtgaggaaa |
30867347 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30867346 |
aaatattcaaaaacaaagtttcaaagaaaatcttacataggcttatgtatataaaatggtagaataaataa |
30867276 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34208052 - 34208222
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||| ||| |||||| |
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|
| T |
34208052 |
tccgatatgggattaatgacaaataacacccaatgtccactacacagatgtcaaagttaattagaaaatcttctataaacgatggtaaaaagtgaggaaa |
34208151 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34208152 |
aaatattcaaaaacaaagtttcaaagaaaatcttacataggcttatgtatataaaatggtagaataaataa |
34208222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1745105 - 1745275
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
1745105 |
tccgatatgggatcaatgacaactaacaaccaatgtgcactacacaaatgccaaagttaattagaaaatattttataaatgatggtaacaagataggaaa |
1745204 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1745205 |
aaacaatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
1745275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0109 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0109
Description:
Target: scaffold0109; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 47666 - 47836
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
47666 |
tccgatatgggattaatgacaaataacacccaatgtccactacacaaatgtcaaagttaattagaaaatcttctataaacgatggtaaaaagtgaggaaa |
47765 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47766 |
aaatattcaaaaacaaagtttcaaagaaaatcttacataggcttatgtatataaaatgatagaataaataa |
47836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 14693425 - 14693595
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
14693425 |
tccgatatgggattaatgacaaataacacccaatgtccactacacaaatgtcaaagttaattacaaaatcttctataaacgatggtaaaaagtgaggaaa |
14693524 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14693525 |
aaatattcaaaaacaaagtttcaaagaaaatcttacataggcttatgtatataaaatggtagaataaataa |
14693595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 125253 - 125424
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaa-tatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaa |
99 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
125253 |
tccgatatgggattaatgacaaataacacccaatgtccactacacaaaatgtcaaagttaattagaaaatcttctataaacgatggtaaaaagtgaggaa |
125352 |
T |
|
| Q |
100 |
aaaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125353 |
aaaatattcaaaaacaaagtttcaacgaaaatcttacataggcttatgtatataaaatggtagaataaataa |
125424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2826 - 2996
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
2826 |
tccgatatgggattaatgacaaataacacccaatgtccactacacaaatgtcaaagttaattaaaaaatcttctataaacgatggtaaaaagtgaggaaa |
2925 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2926 |
aaatattcaaaaacaaagtttcaaagaaaatcttacataggcttatgtatataaaatgatagaataaataa |
2996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 14646950 - 14647120
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||| |||| || ||||| ||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
14646950 |
tccgatatgggattgatgacaaataacacccaatgtccactacacagatgtcaaagttaattagaaaatcttctataaacgatggtaaaaagtgaggaaa |
14647049 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14647050 |
aaatattcaaaaacaaagtttcaaaggaaatcttacataggcttatgtatataaaatggtagaataaataa |
14647120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 48975068 - 48975188
Alignment:
| Q |
172 |
attaagctcatatcttcgttaccagtaacccacctgttgggaacctctcacaccagaccacacttttatgatttctatatcagctacacctacttatgag |
271 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48975068 |
attaagctcatatcttcgctaccagtaacccacctgttgggaacctctcacactagatcacccttttatgatttctatatcagctatgcctacttatgag |
48975167 |
T |
|
| Q |
272 |
ttatttcataaaagagtgttt |
292 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48975168 |
ttatttcataaaagagtgttt |
48975188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 14184918 - 14185057
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||| |||||| |
|
|
| T |
14184918 |
tccgatatgggatcaatgacaaataacacccaatgtccactacacaaatgtcaaagttaattagaaaatcttctataaacga-ggtaaaaagtgaggaaa |
14185016 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttc-aaggaaaatcttacatag |
140 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
14185017 |
aaataatcaaaaacaaagtttctaagaaaaatcttacatag |
14185057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 20028633 - 20028467
Alignment:
| Q |
1 |
tccgatatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatcttttataaacgatggtaacaagataggaaa |
100 |
Q |
| |
|
||||||||| ||||||||| || ||||| ||||||| |||||||||||| | ||| |||||||||||| |||||||| || ||| ||| || ||| |
|
|
| T |
20028633 |
tccgatatgagatcaatgacaaataacacccaatgtccactacacaaatgttcaag----ttagaaaatcttctataaacggtgataaaaagtgagaaaa |
20028538 |
T |
|
| Q |
101 |
aaataatcaaaaacaaagtttcaaggaaaatcttacataggcttatgtatataaaatggtagaataaataa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||||| |
|
|
| T |
20028537 |
aaataatcaaaaacaaagtttcaaggaaaatcttatccagacatatgtatataaaacggtagaataaataa |
20028467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 2567 - 2500
Alignment:
| Q |
5 |
atatgggatcaatgataactaacagccaatgtgcactacacaaatatcaaagttaattagaaaatctt |
72 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
2567 |
atatgggattaatgacaaataacactcaatgcccactacacaaatgtcaaagttaattagaaaatctt |
2500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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