View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16358_low_5 (Length: 297)
Name: NF16358_low_5
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16358_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 68 - 289
Target Start/End: Complemental strand, 7006758 - 7006525
Alignment:
| Q |
68 |
ctcagttcctaatcaaagtcataatttttccaaactagaaaaacaaataagaaacaacccagtattaaattattgnnnnnnncacaattgaatcaaca-- |
165 |
Q |
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| T |
7006758 |
ctcagttcctaatcaaagtcacaatttttctaaactagaaaaacaaataaaaaacaacccagtattaaattattgtttttttcacaattcaatcaacaca |
7006659 |
T |
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| Q |
166 |
atcataatcacaacgagaaattaaaaaacc----------ccaattgattaaaagtgaaaatttgaagaattacctgcgggagtctttctactgccgaac |
255 |
Q |
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| T |
7006658 |
atcataatcacaacgagaaaataaaaaaaataaaaaaaaaccaattgattaaaagtgaaaatttgaagaattacctgcgggagtctttctactgccgaac |
7006559 |
T |
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| Q |
256 |
agaaaactcatattgaatgcttcggtcctatgct |
289 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
7006558 |
agaaaactcatattgaatgcttcgctcctatgct |
7006525 |
T |
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