View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16358_low_7 (Length: 269)
Name: NF16358_low_7
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16358_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 24059111 - 24058860
Alignment:
| Q |
1 |
accttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgcca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
24059111 |
accttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtgccctttttatggcagcttaatgcccaaaatgcca |
24059012 |
T |
|
| Q |
101 |
aattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059011 |
aattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
24058912 |
T |
|
| Q |
201 |
aagaaatttagtcctaaaatattctggatcaagatagccgaagctacccttt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058911 |
aagaaatttagtcctaaaatattctggatcaagatagccgaagctacccttt |
24058860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 30730906 - 30730655
Alignment:
| Q |
1 |
accttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgcca |
100 |
Q |
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|
|||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||| |
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| T |
30730906 |
accttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccgcaatgcca |
30730807 |
T |
|
| Q |
101 |
aattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
200 |
Q |
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|||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |
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| T |
30730806 |
aattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagt |
30730707 |
T |
|
| Q |
201 |
aagaaatttagtcctaaaatattctggatcaagatagccgaagctacccttt |
252 |
Q |
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|
||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
30730706 |
tagaaatttagtcctaaaatattctggatcaacttagccaaaactacccttt |
30730655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 14670914 - 14671165
Alignment:
| Q |
1 |
accttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgcca |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||| |
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| T |
14670914 |
accttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgcca |
14671013 |
T |
|
| Q |
101 |
aattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |
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| T |
14671014 |
aattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagt |
14671113 |
T |
|
| Q |
201 |
aagaaatttagtcctaaaatattctggatcaagatagccgaagctacccttt |
252 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||| || ||||||||| |
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| T |
14671114 |
tagaaacttagtcctaaaatattcaggatcaacatagccaaaactacccttt |
14671165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 14685399 - 14685148
Alignment:
| Q |
1 |
accttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgcca |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| ||| ||||||||||| | ||||| |
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|
| T |
14685399 |
accttgtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacattgcca |
14685300 |
T |
|
| Q |
101 |
aattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || || ||| ||||||||||||||||||| |
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|
| T |
14685299 |
aattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccaaaagagaaaacatctgatttcttagt |
14685200 |
T |
|
| Q |
201 |
aagaaatttagtcctaaaatattctggatcaagatagccgaagctacccttt |
252 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||| || ||||||||| |
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|
| T |
14685199 |
tagaaatgtagtcctaaaatattcaggatcaacatagccaaaactacccttt |
14685148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14705089 - 14704884
Alignment:
| Q |
1 |
accttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagcttaatgcccaaaatgcca |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||| |
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|
| T |
14705089 |
accttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaacttaatgcccacaatgcca |
14704990 |
T |
|
| Q |
101 |
aattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaacaccaccccgaacgagtaaacatctgatttcttagt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| || | ||| ||||||||||||||||||| |
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| T |
14704989 |
aattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccactccataagagaaaacatctgatttcttagt |
14704890 |
T |
|
| Q |
201 |
aagaaa |
206 |
Q |
| |
|
||||| |
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|
| T |
14704889 |
tagaaa |
14704884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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