View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16358_low_9 (Length: 257)
Name: NF16358_low_9
Description: NF16358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16358_low_9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 24059368 - 24059112
Alignment:
| Q |
1 |
ctttcctgcaacacatacatttatgatacatttaaaatatcaactttaacagactttggtttcatacaacatcttctttgtcatctacaaatccatttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24059368 |
ctttcctgcaacacatacatttatgatacatttaaaatatcaactttaacagactatggtttcatacaacatcttctgtgtcatctacaaatccatttcc |
24059269 |
T |
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| Q |
101 |
tacacttgcataagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059268 |
tacacttgcataagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtac |
24059169 |
T |
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| Q |
201 |
cccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaa |
257 |
Q |
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| T |
24059168 |
cccattgatggtctgttcactcgacgctcctccaagcacttccaagccagctctaaa |
24059112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 14685517 - 14685400
Alignment:
| Q |
140 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
239 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
14685517 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataacacataccccattgatggtctgttctccggacgctcctccaagcac |
14685418 |
T |
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| Q |
240 |
ttccaagccaactctaaa |
257 |
Q |
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| T |
14685417 |
ttccaagccaactctaaa |
14685400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 14670796 - 14670913
Alignment:
| Q |
140 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
239 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
14670796 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14670895 |
T |
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| Q |
240 |
ttccaagccaactctaaa |
257 |
Q |
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||||| |||||||||||| |
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| T |
14670896 |
ttccatgccaactctaaa |
14670913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 14705207 - 14705090
Alignment:
| Q |
140 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
239 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
14705207 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14705108 |
T |
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| Q |
240 |
ttccaagccaactctaaa |
257 |
Q |
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||||| |||||||||||| |
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| T |
14705107 |
ttccatgccaactctaaa |
14705090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 30731024 - 30730907
Alignment:
| Q |
140 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
239 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
30731024 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
30730925 |
T |
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| Q |
240 |
ttccaagccaactctaaa |
257 |
Q |
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||||| ||||||| |||| |
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| T |
30730924 |
ttccatgccaactataaa |
30730907 |
T |
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Back To:
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