View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16359_low_11 (Length: 210)

Name: NF16359_low_11
Description: NF16359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16359_low_11
NF16359_low_11
[»] chr3 (2 HSPs)
chr3 (33-196)||(16484829-16484968)
chr3 (61-143)||(9470247-9470329)
[»] chr1 (1 HSPs)
chr1 (33-196)||(44599280-44599419)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 16484829 - 16484968
Alignment:
Q  33 tgtttttaccaatttcaattgcttgttgttgaaaaattgcttctttattataattgcttattcgtattttgaattgcttattttgttatgtagagttgtg 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||    
T  16484829 tgtttttaccaatttcaattgcttgttgttgaaaaattgcttctttattataatt--------------------gcttattttgttatgtagagttgtg 16484908  T
Q  133 cattgtagtttctttgtgtttacaaacttacttactattctattttataggatgaacaagttta 196  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  16484909 cattgtagtttctttgtgtttacaa----acttactattctattttataggatgaacaagttta 16484968  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 9470247 - 9470329
Alignment:
Q  61 ttgaaaaattgcttctttattataattgcttattcgtattttgaattgcttattttgttatgtagagttgtgcattgtagttt 143  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| ||||| ||| ||||||||||| ||||    
T  9470247 ttgaaaaattgcttctttatcataattgcttattcgtatgctgaattgcttatttttttatgcagaattgtgcattgtggttt 9470329  T

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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 44599280 - 44599419
Alignment:
Q  33 tgtttttaccaatttcaattgcttgttgttgaaaaattgcttctttattataattgcttattcgtattttgaattgcttattttgttatgtagagttgtg 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||    
T  44599280 tgtttttaccaatttcaattgcttgttgttgaaaaattgcttctttattataatt--------------------gcttattttgttatgtagagttgtg 44599359  T
Q  133 cattgtagtttctttgtgtttacaaacttacttactattctattttataggatgaacaagttta 196  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  44599360 cattgtagtttctttgtgtttacaa----acttactattctattttataggatgaacaagttta 44599419  T

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