View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16359_low_3 (Length: 450)
Name: NF16359_low_3
Description: NF16359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16359_low_3 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 47421987 - 47421554
Alignment:
| Q |
13 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421987 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47421888 |
T |
|
| Q |
113 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttaaacattatgctaagaaccatcctttttcttgcagacaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |
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| T |
47421887 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----acaa |
47421792 |
T |
|
| Q |
213 |
aaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcccgatgcattagcacaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47421791 |
aaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcctgatgcattagcacaact |
47421692 |
T |
|
| Q |
313 |
acatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacatcagt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421691 |
acatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacatcagt |
47421592 |
T |
|
| Q |
413 |
gctaaaaaatctcaggaacatggtgttcgagtagtgga |
450 |
Q |
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| T |
47421591 |
gctaaaaaatctcaggaacatgatgttcgagtagtgga |
47421554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 47391152 - 47390737
Alignment:
| Q |
13 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47391152 |
gagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtagg |
47391053 |
T |
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| Q |
113 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttaaacattatgctaagaaccatcctttttcttgcagacaa |
212 |
Q |
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| T |
47391052 |
cagaatagatgattt--------------------ttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaa |
47390973 |
T |
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| Q |
213 |
aaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcccgatgcattagcacaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |
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| T |
47390972 |
aaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaacgatccccatgcattagcacaact |
47390873 |
T |
|
| Q |
313 |
acatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacatcagt |
412 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47390872 |
gcatcagagaagtatgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaacctattcaactatggacatcagt |
47390773 |
T |
|
| Q |
413 |
gctaaaaaatctcaggaacatggtgttcgagtagtg |
448 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||| |
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| T |
47390772 |
gctaaaaaacctcaggaacatgatgttcgagtagtg |
47390737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 47419515 - 47419101
Alignment:
| Q |
13 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419515 |
gagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47419416 |
T |
|
| Q |
113 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttaaacattatgctaagaaccatcctttttcttgcagacaa |
212 |
Q |
| |
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|||||||||| || ||||||||||||||||| |||||| ||| ||| |||||||||||||| |||||||||||| |||||| |
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| T |
47419415 |
tagaatagat--------------------gttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaa |
47419336 |
T |
|
| Q |
213 |
aaaccaatacaggttcttctgg---acagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcccgatgcattagcaca |
309 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47419335 |
aaaccaacacaggttcttctggtggacagcagccccctgtaaggatttctactgttacttccagtggaacaaaatttaatgatcccgatgcattagcaca |
47419236 |
T |
|
| Q |
310 |
actacatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacatc |
409 |
Q |
| |
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||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
47419235 |
actgcatcagagaagctggaatgcagctgcagaccattctcataatgcttcttcagctatccaagtaaagagtgagccaacctattcaactatggacatc |
47419136 |
T |
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| Q |
410 |
agtgctaaaaaatctcaggaacatggtgttcgagt |
444 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||| |
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| T |
47419135 |
agtgctaaaaaacctcaggaacatgatgttcgagt |
47419101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 47408286 - 47407849
Alignment:
| Q |
13 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
112 |
Q |
| |
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||||||||||| | ||||| || | |||| ||||| ||||||||||||||| ||||| |||| |||||| ||||||| || ||||||| ||||||||||| |
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| T |
47408286 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtagg |
47408187 |
T |
|
| Q |
113 |
tagaatagatagtttactttatcttaca-atgtgttttcttaaggtggttaaagatagatttaaacattatgctaagaaccatcctttttcttgcagaca |
211 |
Q |
| |
|
|||| || | ||||| |||||| |||| |||| |||||| | || || |||||||| ||| |||||||||||||||| ||||||||||||| | |
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| T |
47408186 |
tagagtatgtggtttatgcagccttacagatgtttttt-ttaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcagata |
47408088 |
T |
|
| Q |
212 |
aaaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgttacttccagtggaacaaaatttaatggtcccgatgcattagcacaac |
311 |
Q |
| |
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||| ||||||| |||||||||||||| |||| |||| |||| ||||||||||||||||| | | | || ||||||||| |||| ||||| ||| | ||| |
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| T |
47408087 |
aaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgttacttcaattccagcacaatttaatgatccccatgcaatagtaaaac |
47407988 |
T |
|
| Q |
312 |
tacatcagagaagtacgaatgctgctgcagaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacatcag |
411 |
Q |
| |
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| |||| |||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||||| || ||| | ||||||||||||||||| || |
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| T |
47407987 |
tgcatccgagaagtatgaatgctgctgcggaccattctcataataattcttcagtaatccaagtgaagactgggccgacttattcaactatggacattag |
47407888 |
T |
|
| Q |
412 |
tgctaaaaaatctcaggaacatggtgttcgagtagtgga |
450 |
Q |
| |
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| ||||||||||||||||||||| ||||| || |||||| |
|
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| T |
47407887 |
tactaaaaaatctcaggaacatgatgttcaagcagtgga |
47407849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 47424696 - 47424605
Alignment:
| Q |
36 |
tttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatagttt |
127 |
Q |
| |
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|||||||||||||||||||| ||||||||| | | |||||||| | ||||| || ||||||| ||||||||| ||||| ||||| |||| |
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| T |
47424696 |
tttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatggttt |
47424605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 46796313 - 46796380
Alignment:
| Q |
341 |
gaccattctcataatgcttcttcagctatccaagtgaagagtgagccaagctattcaactatggacat |
408 |
Q |
| |
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||||||||||||| | ||||||||||| | ||||||||||||||||| | |||||||| ||||||||| |
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| T |
46796313 |
gaccattctcatattacttcttcagctcttcaagtgaagagtgagccgacctattcaattatggacat |
46796380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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