View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16359_low_4 (Length: 421)
Name: NF16359_low_4
Description: NF16359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16359_low_4 |
 | |
|
| [»] scaffold0316 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 157 - 406
Target Start/End: Complemental strand, 39073988 - 39073735
Alignment:
| Q |
157 |
ctcgaatatatacgcaaaaaatttagacaattggatatctgctcaacatatacactttacatcaaagacatatctaatatctgatccgtgttagacacca |
256 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073988 |
ctcgaatatatacgcaagaaatttagataattggatagctgctcaacatctacactttacatcaaagacatatctaatatctgatccgtgttagacacca |
39073889 |
T |
|
| Q |
257 |
acacatatgaaaatattgttatatttatttaattattccattttatctaaatatgtattggcttgtcagcatcattttctttttgaggggtgtcggtgtt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073888 |
acacatatgaaaatattgttatatttatttaattattccattttatctaaatatgtattggcttgtcagcatcattttctttttgaggggtgtcggtgtt |
39073789 |
T |
|
| Q |
357 |
agagtcattgttgatactcatgt----atgtgtgtttataccaatatcaatgtt |
406 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39073788 |
agtgtcattgttgatactcatgtatgtatgtgtgtttataccaatatcaatgtt |
39073735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 7266757 - 7266610
Alignment:
| Q |
2 |
tgtgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtttttaatcctagccatctgatttttagttgccacatgtcatccat |
101 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||| | |||| ||| |
|
|
| T |
7266757 |
tgtgattgg-ggtcagggatggaagtgcttctccatggctttcataaattgatgtttttaatcctagccatggagtttttaattgccatgtatcattcat |
7266659 |
T |
|
| Q |
102 |
cagtgaagagaaccgggtaaatggacagctgcataaatggagcacatct |
150 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
7266658 |
cggtgaagagaaccgggtaaatggatagatgcataaatggagcagatct |
7266610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 53371852 - 53372008
Alignment:
| Q |
1 |
ctgtgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtttttaatcctagccatctgatttttagttgccacatgtcatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53371852 |
ctgtgattggaggtcagggatggaattgattctctatggctttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatcca |
53371951 |
T |
|
| Q |
101 |
tcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactcc |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53371952 |
tcagtgaagagaaccgggtaaatggacagctgcataaatggagcagatctgcactcc |
53372008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23011098 - 23010942
Alignment:
| Q |
1 |
ctgtgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtttttaatcctagccatctgatttttagttgccacatgtcatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23011098 |
ctgtgattggaggtcagggatggaattgattctctatgactttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatcca |
23010999 |
T |
|
| Q |
101 |
tcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactcc |
157 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23010998 |
tcagtgaagagaaccaggtaaatggacagctgcataaatggagcagatctgcactcc |
23010942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 21604207 - 21604173
Alignment:
| Q |
38 |
ggctttcatcaattgatgtttttaatcctagccat |
72 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
21604207 |
ggctttcatcaattcatgtttttaatcctagccat |
21604173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 2971 - 3127
Alignment:
| Q |
1 |
ctgtgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtttttaatcctagccatctgatttttagttgccacatgtcatcca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
2971 |
ctgtgattggaggtcagggatggaattgattatctatggctttcatcaattgatgtgtttaatcctaaccatctgatttttagttgccacgtgtcatcca |
3070 |
T |
|
| Q |
101 |
tcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactcc |
157 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3071 |
tcagtgaagagaatcgggtaaatggacagctgcataaatggagcagatctgcactcc |
3127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 32239578 - 32239441
Alignment:
| Q |
8 |
tggaggtcagggatggaagtgattctctatggctttcatcaattgatgtttttaatcctagccatctgatttttagttgccacatgtcatccatcagtga |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32239578 |
tggaggtcagagatggaagtgattctctatggctttcatcaattgatgtgtttaatcctagccatctgatttttagttgccacgtgtcatccatcagtga |
32239479 |
T |
|
| Q |
108 |
agagaaccgggtaaatggacagctgcataaatggagca |
145 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
32239478 |
agagaactgagtaaatggacagctgcataaatggagca |
32239441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 32240014 - 32240131
Alignment:
| Q |
40 |
ctttcatcaattgatgtttt-taatcctagccatctgatttttagttgccacatgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaa |
138 |
Q |
| |
|
||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240014 |
ctttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaa |
32240113 |
T |
|
| Q |
139 |
tggagcacatctgcactc |
156 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
32240114 |
tggagcagatctgcactc |
32240131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 51165436 - 51165516
Alignment:
| Q |
77 |
tttttagttgccacatgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactcc |
157 |
Q |
| |
|
|||||| ||||||| |||||| ||| ||||| |||||||||||| ||||||| | | |||||||||| ||||||||||| |
|
|
| T |
51165436 |
tttttaattgccacgtgtcatgtatctgtgaaaagaaccgggtaactggacagatataaaaatggagcagatctgcactcc |
51165516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 27117906 - 27117753
Alignment:
| Q |
4 |
tgattggaggtcagggatggaagtgattctctatggctttcatcaattgatgtttttaatcctagccatctgatttttagttgccacatgtcatccatca |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
27117906 |
tgattgggggtcagggatggaagtgattctctctggctttcatcaattgatgtgtttaatcctagctatcggatttttagttgccatgtgtcatccatcg |
27117807 |
T |
|
| Q |
104 |
gtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactcc |
157 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| |
|
|
| T |
27117806 |
gtgaagagaaccgggtaaatggagaactgcataaattgagcagatctggactcc |
27117753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 27118418 - 27118479
Alignment:
| Q |
78 |
ttttagttgccacatgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaat |
139 |
Q |
| |
|
||||| ||||||||||||||||||| || || ||||| ||||||| ||||||||||||||| |
|
|
| T |
27118418 |
ttttaattgccacatgtcatccatccgtaaaaagaactgggtaaacagacagctgcataaat |
27118479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 41763852 - 41763787
Alignment:
| Q |
92 |
tgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactcc |
157 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
41763852 |
tgtcatccatcggtgaagagaatcggataaatggacagttgcataaatggagcagatctgcactcc |
41763787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University