View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16359_low_5 (Length: 400)
Name: NF16359_low_5
Description: NF16359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16359_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 400
Target Start/End: Original strand, 48486820 - 48487216
Alignment:
| Q |
6 |
agattattcttaatatgagcgaatacaagccaaatattcttgcaggcagaacaacaaccaaaatcaca--cacaaacacaaacctatccatgaattccaa |
103 |
Q |
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| T |
48486820 |
agattattcttaatatgagcgagtacaagccaaatattcttgcaggcagaacaacaaccaaaatcacacacacaaacacaaacctatccatgaattccaa |
48486919 |
T |
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| Q |
104 |
gaaggggaataccatcccctgcttcgcccatgcatagtcctgccaagtgcccatcacaaattcattagatttcaacaataacaacaactcaaacctttac |
203 |
Q |
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| T |
48486920 |
gaaggggaataccatcccctgcttcgcccatgcatagtcctgccaagtgcccatcacaaattcattagatttcaacaataacaacaactcaaacctttac |
48487019 |
T |
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| Q |
204 |
ataaaggtgtgttgagaagagcttaccctgtgctttccatttttcgaataaccgaaaaacataacacaaattgcatcgggaacacaacatctaagaacag |
303 |
Q |
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| T |
48487020 |
ataaaggtgtgttgagaagagcttaccctgtgctttccatttttcgaataaccgaaaaacataacacaaattgcatcgggaacacaacgtctaagaacag |
48487119 |
T |
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| Q |
304 |
actcaggagcttgtaaaataggatcaatgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaatgaaaatc |
400 |
Q |
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| T |
48487120 |
actcaggagcttgtgaaataggatcaatgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaatgaaaatc |
48487216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 10032725 - 10032571
Alignment:
| Q |
238 |
ttccatttttcgaataaccgaaaaacataacacaaattgcatcgggaacacaaca-tctaagaacagactcaggagcttgtaaaataggatcaatgacaa |
336 |
Q |
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|||||||||||||||||||||||||||| ||||||| || ||| ||||||||||| || | | || || | |||||| | | | | ||||||||| || | |
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| T |
10032725 |
ttccatttttcgaataaccgaaaaacatcacacaaagtgtatccggaacacaacagtcgatg-acggattgaggagcctctgagagaggatcaatcacca |
10032627 |
T |
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| Q |
337 |
cagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaa |
392 |
Q |
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| T |
10032626 |
caccgggccaagccggaaacctcttcccgcatttcgcccaaacaatatcacccaaa |
10032571 |
T |
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