View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16359_low_6 (Length: 359)
Name: NF16359_low_6
Description: NF16359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16359_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 37653368 - 37653644
Alignment:
| Q |
10 |
aagaaaatccacaaacctaggtaaagatgttaaaggtaaccatctatattgctaggaaacttcgactacttcacccatacataataaataaatcattgga |
109 |
Q |
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| T |
37653368 |
aagaaaatccacaaacctaggtaaagatgttaaaggtaaccatctatattgctaggaaacttcgactacttcacccatacataataaataaatcattgga |
37653467 |
T |
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| Q |
110 |
tatatgtggcgataataacaatttgaagaatgactttgatccagtggcagagggaagaactacatgtccatcatcatgattctaaattcatagaaatcaa |
209 |
Q |
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| T |
37653468 |
tatatgtggcgataataacaatttgaagaatgacttcgatccagtggcagagggaagaactacatgtccatcatcatgattctaaattcatcgaaatcaa |
37653567 |
T |
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| Q |
210 |
ttctgccatcaccatcggtgtcaacgcagccgatcattcttccacatttggccaaggagcactcttcaccaaagctt |
286 |
Q |
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| T |
37653568 |
ttctgccatcaccatcggtgtcaacgcagcctatcattcttccacatttggccaaggagcactcttcaccaaagctt |
37653644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 340
Target Start/End: Original strand, 37655371 - 37655533
Alignment:
| Q |
178 |
catcatcatgattctaaattcatagaaatcaattctgccatcaccatcggtgtcaacgcagccgatcattcttccacatttggccaaggagcactcttca |
277 |
Q |
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| T |
37655371 |
catcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaacgcgaccaataattctttcacattcatccaaggaacactcttga |
37655470 |
T |
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| Q |
278 |
ccaaagcttttcataaccgtattgagctcctccacggtgatgaaaccgtcaccatcaatgtca |
340 |
Q |
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| T |
37655471 |
ccaatgcttctcataagcgtgttaagctccttcgccgtgatgaaaccatcgccatcaatgtca |
37655533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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