View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16360_high_3 (Length: 446)
Name: NF16360_high_3
Description: NF16360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16360_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 38244490 - 38244927
Alignment:
| Q |
1 |
tgaaaatgaatacttctactacttcttctcatcttgatcttgatgtaggtttatcatcacaactacaagaactgccttctcaaactatcaatttatttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244490 |
tgaaaatgaatacttctactacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactgccttctcaaactatcaatttatttgt |
38244589 |
T |
|
| Q |
101 |
tactgatgttggggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaatccacagcctaccacacaagaaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
38244590 |
tactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaattcacagcctaccacacgagaaa |
38244689 |
T |
|
| Q |
201 |
catggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38244690 |
catggaccatacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaag |
38244789 |
T |
|
| Q |
301 |
aagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
38244790 |
aagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactacttttgttcctgttgttgc |
38244889 |
T |
|
| Q |
401 |
ttgtgctgataagaaacatgcttcaatcaatgatgatg |
438 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |
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|
| T |
38244890 |
ttgtgctgataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 438
Target Start/End: Original strand, 38260812 - 38261227
Alignment:
| Q |
22 |
cttcttctcatcttgatcttgatgtaggtttatcatcacaactacaagaactgccttctcaaactatcaatttatttgttactgatgttggggatattaa |
121 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| || ||| | | ||| ||||||||||| || |||| |
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|
| T |
38260812 |
cttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg-atgttaa |
38260910 |
T |
|
| Q |
122 |
caagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcc |
221 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
38260911 |
caagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttca |
38261010 |
T |
|
| Q |
222 |
caatgcaacaaaatatttgaaacttcacaaaaatttgctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagataca |
321 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
38261011 |
aaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaaaaaagagataca |
38261110 |
T |
|
| Q |
322 |
attctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttgcttgtgctgataagaaacatgc |
421 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||| |||||| |
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|
| T |
38261111 |
tttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcacatgc |
38261210 |
T |
|
| Q |
422 |
ttcaatcaatgatgatg |
438 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
38261211 |
ttatgtcaatgatgatg |
38261227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 165 - 394
Target Start/End: Complemental strand, 47285733 - 47285507
Alignment:
| Q |
165 |
gatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatc |
264 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||| ||||||||||| ||| | ||||| | ||||||||| || | | ||| ||||| ||||| ||| || |
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|
| T |
47285733 |
gatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgctgctc |
47285634 |
T |
|
| Q |
265 |
atgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagct |
364 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||| |
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|
| T |
47285633 |
atgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagct |
47285537 |
T |
|
| Q |
365 |
caatgacggaataactacttttgttcctgt |
394 |
Q |
| |
|
| |||| |||| ||||||| ||||| |||| |
|
|
| T |
47285536 |
cgatgatggaacaactactcttgtttctgt |
47285507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 391
Target Start/End: Complemental strand, 47307290 - 47307067
Alignment:
| Q |
165 |
gatgatggtaaaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatc |
264 |
Q |
| |
|
|||||||||| || |||||| ||| ||||||| ||| |||||||||| | ||| | | || |||||| || | | ||| |||||||||||||||| || |
|
|
| T |
47307290 |
gatgatggtagaacccacagtctatcacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtc |
47307191 |
T |
|
| Q |
265 |
atgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagatt-caaaagc |
363 |
Q |
| |
|
||| |||||| |||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||| || || |||| ||||||| |
|
|
| T |
47307190 |
atg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatc-tccgattccaaaagc |
47307095 |
T |
|
| Q |
364 |
tcaatgacggaataactacttttgttcc |
391 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
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|
| T |
47307094 |
tcaatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 402
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
274 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
373 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||||||||||| |||| ||| ||||||||||| ||| | |||||||||||||||||| || |
|
|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
374 |
aataactacttttgttcctgttgttgctt |
402 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |
|
|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 10299735 - 10299610
Alignment:
| Q |
274 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacg |
372 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| |||||||| |||| ||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
373 |
gaataactacttttgttcctgttgtt |
398 |
Q |
| |
|
||| ||||||||||||||| |||||| |
|
|
| T |
10299635 |
gaacaactacttttgttccggttgtt |
10299610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 2589833 - 2589923
Alignment:
| Q |
309 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
399 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| |||||| |||||||| ||||||| |||| ||| |||||||||| ||||||| |
|
|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttg |
2589923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 399
Target Start/End: Original strand, 22222532 - 22222657
Alignment:
| Q |
274 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
373 |
Q |
| |
|
||||||||||||| || |||| | ||||||| |||||||||||||||| |||||||| | ||||||| | ||| ||||||||||| ||||||| || |
|
|
| T |
22222532 |
caagtcactacaattttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttgg |
22222631 |
T |
|
| Q |
374 |
aataactacttttgttcctgttgttg |
399 |
Q |
| |
|
|| ||| || |||||| | ||||||| |
|
|
| T |
22222632 |
aacaacaacatttgtttcagttgttg |
22222657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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