View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16360_high_4 (Length: 394)
Name: NF16360_high_4
Description: NF16360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16360_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 594905 - 595265
Alignment:
| Q |
19 |
ctttaggtacgattcttcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccg |
118 |
Q |
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| T |
594905 |
ctttaggtacgattcttcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccg |
595004 |
T |
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| Q |
119 |
taagaatcttaaactgtcgatgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaa |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595005 |
taagaatcttaaactgtcaatgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaa |
595104 |
T |
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| Q |
219 |
atgagagtaaagcaagaatattttccaaagttcatcattaatttgcagatttgtacccttgcagttttgcttttacaacttatcacgggttcataagtag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
595105 |
atgagagtaaagcaagaatattttccaaagttcatcattaatttgcagatttgtaccattgcagttttgcttttacaacttatcacgggttcataagtag |
595204 |
T |
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| Q |
319 |
tcgactaagtactcaaatgaacgtataaatcttggatggattgtctgtcgccctctctctg |
379 |
Q |
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| T |
595205 |
tcgactaagtactcaaatgaacgtataaatcttggatggattgtctgtcgccctctctctg |
595265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 253
Target Start/End: Complemental strand, 28168972 - 28168753
Alignment:
| Q |
35 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactg |
134 |
Q |
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| T |
28168972 |
tcccttgtgaaggtcttcatgatgaacctttctgcaccatttatctgcgagttcttcaaggatccacaggagaaagctctgccgtaagaatcctaaactg |
28168873 |
T |
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| Q |
135 |
tcga-tgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaa |
233 |
Q |
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| | | |||| ||| || |||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||| | |||||| |
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| T |
28168872 |
ttaaattgaaataaattatttttttcttattgatctttaaggatttgcattctgggattcaggtatatggactatgtttttggaaatgagactgaagcaa |
28168773 |
T |
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| Q |
234 |
gaatattttccaaagttcat |
253 |
Q |
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||| |||||||||||||||| |
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| T |
28168772 |
gaacattttccaaagttcat |
28168753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 27925099 - 27925051
Alignment:
| Q |
35 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtg |
83 |
Q |
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| T |
27925099 |
tcccttgtgaaggtcttcatgatgaacctttctgcaccatttatctgtg |
27925051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 22476755 - 22476977
Alignment:
| Q |
35 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactg |
134 |
Q |
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||||||| | |||| ||||||||||||||||| ||| ||||| |||| |||||| |||||||| || |||||||| | ||||||||||| | || | |
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| T |
22476755 |
tcccttgcgcaggttttcatgatgaacctttctgcaccctttatctgtgagttcttcaaggatccacaggagaaagctcttccgtaagaatccttcaccg |
22476854 |
T |
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| Q |
135 |
tcga-tgcaaatgaata---atatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaag |
230 |
Q |
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|| | | |||| |||| || |||||||||||| ||||||||| |||||||||| ||||||| |||||||| |||||| || ||||||||| | ||| |
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| T |
22476855 |
tcaaatttaaataaatatttatgtttttcttattgatctttaagggtttgcattctgggattcaggtatatggactatgtatttggaaatgagactgaag |
22476954 |
T |
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| Q |
231 |
caagaatattttccaaagttcat |
253 |
Q |
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|| | | |||||| ||||||||| |
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| T |
22476955 |
cacggacattttcgaaagttcat |
22476977 |
T |
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