View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16360_high_7 (Length: 354)

Name: NF16360_high_7
Description: NF16360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16360_high_7
NF16360_high_7
[»] chr1 (3 HSPs)
chr1 (1-340)||(34974798-34975136)
chr1 (98-340)||(34988608-34988851)
chr1 (43-340)||(34979508-34979794)
[»] chr3 (21 HSPs)
chr3 (170-330)||(22178872-22179032)
chr3 (169-330)||(21936607-21936768)
chr3 (36-330)||(22657923-22658239)
chr3 (169-339)||(22621762-22621932)
chr3 (169-332)||(30990127-30990290)
chr3 (248-330)||(22104256-22104338)
chr3 (242-329)||(2806817-2806904)
chr3 (240-340)||(22649006-22649106)
chr3 (170-329)||(22033981-22034140)
chr3 (245-329)||(2789917-2790001)
chr3 (185-329)||(22010301-22010445)
chr3 (185-329)||(22186467-22186611)
chr3 (170-329)||(22113844-22114003)
chr3 (239-321)||(2818110-2818192)
chr3 (263-329)||(21945181-21945247)
chr3 (246-329)||(2796921-2797004)
chr3 (245-327)||(2768628-2768710)
chr3 (246-327)||(2748558-2748639)
chr3 (244-321)||(2758772-2758849)
chr3 (244-312)||(2856322-2856390)
chr3 (264-329)||(5412485-5412550)
[»] scaffold0691 (1 HSPs)
scaffold0691 (239-329)||(6647-6737)
[»] chr7 (2 HSPs)
chr7 (251-317)||(873405-873471)
chr7 (251-317)||(1234682-1234748)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 34974798 - 34975136
Alignment:
Q  1 tggttgtataaatatcatttctcaataattactatcaacttgctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcataga 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34974798 tggttgtataaatatcatttctcgataattattatcaacttgctcaaaatattatttacctaagactaagggaaactccgtcttccagtgactgcataga 34974897  T
Q  101 ttgcactaaacaagtctcagttatgagtaactttaatcttcatctcacagaataacaaaaaatctcacaatggcagaaatagcagtgtcttttgctatta 200  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  34974898 ttgcactaaactagtctcagttatgagtaactttaatct-catctcacagaataacaaaaaatatcacaatggcagaaatagcagtgtcttttgctattg 34974996  T
Q  201 accaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagcctt 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974997 accaactgcttccattgttaacagcaaaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagcctt 34975096  T
Q  301 cctcaaagatgctgatagaagagctgcagcagaagaagac 340  Q
    |||||||||| ||||||||||||||||||| |||| ||||    
T  34975097 cctcaaagattctgatagaagagctgcagctgaaggagac 34975136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 98 - 340
Target Start/End: Original strand, 34988608 - 34988851
Alignment:
Q  98 agattgcactaaacaagtctcagttatgagtaactt-taatcttcatctcacagaataacaaaaaatctcacaatggcagaaatagcagtgtcttttgct 196  Q
    ||||||||| |||||||||||| ||| |||||| || || ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  34988608 agattgcaccaaacaagtctcaattacgagtaaattgtagtcttcgtctcatagaataacaaaaaatcttacaatggcagaaatggcagtgtcttttgct 34988707  T
Q  197 attaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaag 296  Q
    ||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  34988708 attaagcaactgcttccattgttaacggaagaaaccaaactactgaaaggtgttcacaaagaatttgcagacattaaatatgaactggaaagcatccaaa 34988807  T
Q  297 ccttcctcaaagatgctgatagaagagctgcagcagaagaagac 340  Q
    |||||||  ||||||||||||||||||||||||| |||| ||||    
T  34988808 ccttccttgaagatgctgatagaagagctgcagctgaaggagac 34988851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 43 - 340
Target Start/End: Original strand, 34979508 - 34979794
Alignment:
Q  43 ctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatagattgcactaaacaagtctcagttatgagtaactttaatcttca 142  Q
    |||||||||||||||| | ||||||||||||||||| |||||||| | || ||| ||||||||||| ||||||             || | || |||||     
T  34979508 ctcaaaatattatttaacaaggactaagggaaactcagtcttccattaaccgcaaagattgcactacacaagta------------aattgtagtcttct 34979595  T
Q  143 tctcacagaataacaaaaaatctcacaa-tggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactg 241  Q
    |||||||||||| |||||| |||||||| |||||||||  |||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||     
T  34979596 tctcacagaatatcaaaaattctcacaaatggcagaaaaggcagtgtcttttgctattgaccaactgcttccattgttaacataagaaaccaaactacta 34979695  T
Q  242 aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagac 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| ||||    
T  34979696 aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaaggagac 34979794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 22178872 - 22179032
Alignment:
Q  170 atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca 269  Q
    ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||  ||||  |||  | || |||||||||| ||| ||||||| ||| |    
T  22178872 atggcagaaatggcagtttcttttgctattgaccaactgcttccattgttaacacaagaagtcaatcttctcaaaggtgttcccaaggaatttgaagata 22178971  T
Q  270 ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagc 330  Q
    ||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22178972 ttaaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagc 22179032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 330
Target Start/End: Original strand, 21936607 - 21936768
Alignment:
Q  169 aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac 268  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||| ||||| |||| ||||  |||  | || |||||||||||||| ||||||| ||||    
T  21936607 aatggcagaaatggctgtgtcttttgctattgaccaacttcttccgttgttgacagaagaagtcaatcttctcaaaggtgttcacaaggaatttggagac 21936706  T
Q  269 attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagc 330  Q
    |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||||||||    
T  21936707 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagc 21936768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 330
Target Start/End: Complemental strand, 22658239 - 22657923
Alignment:
Q  36 caacttgctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatagattgcactaaacaagtctcagttatgagtaactt-t 134  Q
    |||||||||||||| ||||| || | |||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |||||| || |    
T  22658239 caacttgctcaaaaaattatgtaacaaggacatagggaaactcagtcttccactaactacatagattgcactaaacaagtctcaattaggagtaaattgt 22658140  T
Q  135 aatcttcatctcaca--------------------gaataacaaaaaa-tctcacaatggcagaaatagcagtgtcttttgctattaaccaactgcttcc 213  Q
    | |||||||||||||                    ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||| |||||||    
T  22658139 agtcttcatctcacacaagcagtcttcatctcatagaataacaaaaaaatctcataatggcagaaatagcggtgtcttttgctattgaccaattgcttcc 22658040  T
Q  214 attgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgct 313  Q
    | ||||||||| ||||| |||  | || ||||||||||||||  ||||| |||| |||||| ||||||| || || || | ||||||||| || || |||    
T  22658039 actgttaacaggagaaatcaatctgctcaaaggtgttcacaagaaattttcagatattaaagatgaactggagagtatccgagccttccttaaggacgct 22657940  T
Q  314 gatagaagagctgcagc 330  Q
    || ||||||||| ||||    
T  22657939 gacagaagagctacagc 22657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 339
Target Start/End: Complemental strand, 22621932 - 22621762
Alignment:
Q  169 aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac 268  Q
    |||||||||||| ||||||||||||||  || ||||| | |||||||||||||  | |||| |||  || || || ||  ||||||||||||||||||||    
T  22621932 aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac 22621833  T
Q  269 attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaaga 339  Q
    |||||| ||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  ||||||||    
T  22621832 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaagaaga 22621762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 30990290 - 30990127
Alignment:
Q  169 aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac 268  Q
    |||||||||||| ||||||||||| | |||| | ||||| |||||| ||||||  | |||| ||||  | || | |||||||||||| |||||| ||||     
T  30990290 aatggcagaaattgcagtgtctttagttattgatcaactacttccactgttaagggaagaagccaatctgctaagaggtgttcacaaggaattttcagat 30990191  T
Q  269 attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcag 332  Q
    |||||| ||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  30990190 attaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagagctgcagcag 30990127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 22104256 - 22104338
Alignment:
Q  248 gttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagc 330  Q
    |||||||| |||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22104256 gttcacaaggaatttgcagaccttaaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagc 22104338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 2806817 - 2806904
Alignment:
Q  242 aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    |||||||| |||| ||||||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| ||||||||||| ||||    
T  2806817 aaaggtgtacacacagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag 2806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 22649106 - 22649006
Alignment:
Q  240 tgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaaga 339  Q
    |||||||  ||||||| ||||||||| |||||||| ||||||| || | ||| ||||||| ||| || |||||||||||||||||||| || ||||||||    
T  22649106 tgaaaggcattcacaacgaatttgcaaacattaaagatgaactggagatcatccaagcctcccttaaggatgctgatagaagagctgccgctgaagaaga 22649007  T
Q  340 c 340  Q
    |    
T  22649006 c 22649006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 22033981 - 22034140
Alignment:
Q  170 atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca 269  Q
    ||||| ||||| || |||||||| | | || ||||||| |||||| ||||||| | |||| ||||  |  ||| ||| |||||||| || || ||||| |    
T  22033981 atggcggaaatggcggtgtctttagttgttgaccaactacttccactgttaacggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga 22034080  T
Q  270 ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| ||||||| |||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22034081 ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22034140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 2789917 - 2790001
Alignment:
Q  245 ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| |||||||| |||  |||||| ||| ||||||| || |||||||||| ||||||||||||||| |||| |||||||||||    
T  2789917 ggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcag 2790001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 329
Target Start/End: Original strand, 22010301 - 22010445
Alignment:
Q  185 gtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcg 284  Q
    |||||||| | |||| ||||||| |||||| ||||||  | |||||||||  |  ||| |||  ||||||| || |||||| ||||||||  |||||| |    
T  22010301 gtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggagtttgcaaacattaaagctgaactgg 22010400  T
Q  285 aaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22010401 aaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22010445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 329
Target Start/End: Original strand, 22186467 - 22186611
Alignment:
Q  185 gtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcg 284  Q
    |||||||| | |||| ||||||| |||||| ||||||  | |||||||||  |  ||| |||  ||||||| || |||||| ||||||||  |||||| |    
T  22186467 gtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggattttgcaaacattaaagctgaactgg 22186566  T
Q  285 aaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22186567 aaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22186611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 22113844 - 22114003
Alignment:
Q  170 atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca 269  Q
    |||||||||||  | |||||||| | | || ||||||| |||||| ||||||  | |||| ||||  |  ||| ||| |||||||| || || ||||| |    
T  22113844 atggcagaaatgtcggtgtctttagttgttgaccaactacttccactgttaagggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga 22113943  T
Q  270 ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| ||||||| |||||||||||||| ||||| || |||||||||| |||||| ||||    
T  22113944 ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcag 22114003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 2818110 - 2818192
Alignment:
Q  239 ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaag 321  Q
    |||| |||||| |||| ||| ||| ||||||| ||| ||||||| |||||||| |||| ||||||||||||||| ||||||||    
T  2818110 ctgagaggtgtacacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaag 2818192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 21945181 - 21945247
Alignment:
Q  263 gcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||| |||||| ||||||| |||||||||||||| |||||||| |||||||||| |||||| ||||    
T  21945181 gcagagattaaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcag 21945247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 2796921 - 2797004
Alignment:
Q  246 gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    |||| |||||||| ||| ||||||| | | ||||||| || ||||||||||  |||||||||||||| |||| |||||||||||    
T  2796921 gtgtgcacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcag 2797004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 2768628 - 2768710
Alignment:
Q  245 ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc 327  Q
    ||||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| || ||||| |||||    
T  2768628 ggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2768710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 2748558 - 2748639
Alignment:
Q  246 gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc 327  Q
    |||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| || ||||| |||||    
T  2748558 gtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2748639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 2758772 - 2758849
Alignment:
Q  244 aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaag 321  Q
    |||||| |||||||| ||   |||||| ||| ||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  2758772 aggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaag 2758849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 2856390 - 2856322
Alignment:
Q  244 aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgc 312  Q
    |||||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| |||||||||||||||    
T  2856390 aggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 2856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 5412485 - 5412550
Alignment:
Q  264 cagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    ||||||| ||| ||||||| |||| ||||||| |||||||||||||||| || | ||| |||||||    
T  5412485 cagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcag 5412550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 6737 - 6647
Alignment:
Q  239 ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag 329  Q
    |||| |||||| |||| ||| ||| ||||||| ||| ||||||| ||||||||||||  ||||||||||||||| || ||||  |||||||    
T  6737 ctgagaggtgtacacacagattttacagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcag 6647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 873471 - 873405
Alignment:
Q  251 cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgata 317  Q
    ||||| || ||||||||||||||| ||||||| ||||| |||||||| ||||| || ||||||||||    
T  873471 cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgata 873405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 1234748 - 1234682
Alignment:
Q  251 cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgata 317  Q
    ||||| || ||||||||||||||| ||||||| ||||| |||||||| ||||| || ||||||||||    
T  1234748 cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgata 1234682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University